RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 C12orf77C9JDV5 145 aa11.96□□□□□ -0.5
SDC1-201ENST00000254351 MT-CO3P00414 261 aa11.96□□□□□ -0.5
SDC1-201ENST00000254351 CD99P14209 185 aa11.96□□□□□ -0.5
SDC1-201ENST00000254351 GNG4P50150 75 aa11.96□□□□□ -0.5
SDC1-201ENST00000254351 FBLN7Q53RD9 439 aa11.96□□□□□ -0.5
SDC1-201ENST00000254351 PRAMEF5Q5TYX0 476 aa11.96□□□□□ -0.5
SDC1-201ENST00000254351 PRAMEF6Q5VXH4 476 aa11.96□□□□□ -0.5
SDC1-201ENST00000254351 Q8N7P7 452 aa11.96□□□□□ -0.5
SDC1-201ENST00000254351 ZNF596Q8TC21 504 aa11.96□□□□□ -0.5
SDC1-201ENST00000254351 CLEC5AQ9NY25 188 aa11.96□□□□□ -0.5
SDC1-201ENST00000254351 BET1LQ9NYM9 111 aa11.96□□□□□ -0.5
SDC1-201ENST00000254351 FZR1Q9UM11 496 aa11.96□□□□□ -0.5
SDC1-201ENST00000254351 COL5A1P20908 1838 aaPredicted RBP11.96□□□□□ -0.5
SDC1-201ENST00000254351 A0A1W2PN81 502 aa11.95□□□□□ -0.5
SDC1-201ENST00000254351 CA2P00918 260 aa11.95□□□□□ -0.5
SDC1-201ENST00000254351 CTRLP40313 264 aa11.95□□□□□ -0.5
SDC1-201ENST00000254351 PSG5Q15238 335 aa11.95□□□□□ -0.5
SDC1-201ENST00000254351 KIR3DL3Q8N743 410 aa11.95□□□□□ -0.5
SDC1-201ENST00000254351 SCCPDHQ8NBX0 429 aa11.95□□□□□ -0.5
SDC1-201ENST00000254351 SLC24A4Q8NFF2 622 aa11.95□□□□□ -0.5
SDC1-201ENST00000254351 SF3B5Q9BWJ5 86 aaKnown RBP11.95□□□□□ -0.5
SDC1-201ENST00000254351 ROS1P08922 2347 aa11.95□□□□□ -0.5
SDC1-201ENST00000254351 IGHV1-45A0A0A0MS14 117 aa11.95□□□□□ -0.5
SDC1-201ENST00000254351 SNAI2O43623 268 aa11.95□□□□□ -0.5
SDC1-201ENST00000254351 ZNF324O75467 553 aaPredicted RBP11.95□□□□□ -0.5
SDC1-201ENST00000254351 HBZP02008 142 aa11.95□□□□□ -0.5
SDC1-201ENST00000254351 B3GALT5-AS1P59052 145 aa11.95□□□□□ -0.5
SDC1-201ENST00000254351 STUMQ69YW2 141 aa11.95□□□□□ -0.5
SDC1-201ENST00000254351 Q6P435 159 aa11.95□□□□□ -0.5
SDC1-201ENST00000254351 MOB3BQ86TA1 216 aa11.95□□□□□ -0.5
SDC1-201ENST00000254351 FAM168AQ92567 244 aa11.95□□□□□ -0.5
SDC1-201ENST00000254351 EAF1Q96JC9 268 aaPredicted RBP11.95□□□□□ -0.5
SDC1-201ENST00000254351 KCNS1Q96KK3 526 aa11.95□□□□□ -0.5
SDC1-201ENST00000254351 HES7Q9BYE0 225 aa11.95□□□□□ -0.5
SDC1-201ENST00000254351 COX11Q9Y6N1 276 aa11.95□□□□□ -0.5
SDC1-201ENST00000254351 KLF3P57682 345 aaPredicted RBP11.95□□□□□ -0.5
SDC1-201ENST00000254351 WDR86Q86TI4 376 aa11.95□□□□□ -0.5
SDC1-201ENST00000254351 ZNF439Q8NDP4 499 aa11.95□□□□□ -0.5
SDC1-201ENST00000254351 WASHC3Q9Y3C0 194 aa11.95□□□□□ -0.5
SDC1-201ENST00000254351 NCKAP5O14513 1909 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 OR7C2O60412 319 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 GCHFRP30047 84 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 CXCL12P48061 93 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 PLP2Q04941 152 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 ZNF497Q6ZNH5 498 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 MIR17HGQ75NE6 70 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 NIT1Q86X76 327 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 ZNF645Q8N7E2 425 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 Q8NFD4 153 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 TSKUQ8WUA8 353 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 LEAP2Q969E1 77 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 ARL2-SNX15V9GYD0 113 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 HELTA6NFD8 242 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 BMPR1BO00238 502 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 HSBP1O75506 76 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 PSG1P11464 419 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 COX6A1P12074 109 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 CATR1Q13166 79 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 SLAQ13239 276 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 TNXAQ16473 311 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 MPV17L2Q567V2 206 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 PMCHL2Q9BQD1 86 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 SLC35D1Q9NTN3 355 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 WDR83OSQ9Y284 106 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 CADP27708 2225 aa11.94□□□□□ -0.5
SDC1-201ENST00000254351 RNF212BA8MTL3 300 aa11.93□□□□□ -0.5
SDC1-201ENST00000254351 CXorf1O96002 111 aa11.93□□□□□ -0.5
SDC1-201ENST00000254351 CELA3BP08861 270 aa11.93□□□□□ -0.5
SDC1-201ENST00000254351 RPL8P62917 257 aaKnown RBP11.93□□□□□ -0.5
SDC1-201ENST00000254351 KRTAP27-1Q3LI81 207 aa11.93□□□□□ -0.5
SDC1-201ENST00000254351 HSD17B10Q99714 261 aaKnown RBP11.93□□□□□ -0.5
SDC1-201ENST00000254351 V9GYV3 84 aa11.93□□□□□ -0.5
SDC1-201ENST00000254351 M0R2Z0 102 aa11.93□□□□□ -0.5
SDC1-201ENST00000254351 CER1O95813 267 aa11.93□□□□□ -0.5
SDC1-201ENST00000254351 IGLL1P15814 213 aa11.93□□□□□ -0.5
SDC1-201ENST00000254351 ZNF841Q6ZN19 808 aa11.93□□□□□ -0.5
SDC1-201ENST00000254351 COLCA1Q6ZS62 124 aa11.93□□□□□ -0.5
SDC1-201ENST00000254351 LHFPL4Q7Z7J7 247 aa11.93□□□□□ -0.5
SDC1-201ENST00000254351 TCTEX1D1Q8N7M0 179 aa11.93□□□□□ -0.5
SDC1-201ENST00000254351 OR4A16Q8NH70 328 aa11.93□□□□□ -0.5
SDC1-201ENST00000254351 GGTLC1Q9BX51 225 aa11.93□□□□□ -0.5
SDC1-201ENST00000254351 GAL3ST2Q9H3Q3 398 aa11.93□□□□□ -0.5
SDC1-201ENST00000254351 TECRQ9NZ01 308 aaKnown RBP11.93□□□□□ -0.5
SDC1-201ENST00000254351 FAM90A26D6RGX4 464 aa11.93□□□□□ -0.5
SDC1-201ENST00000254351 K7ESF4 209 aa11.93□□□□□ -0.5
SDC1-201ENST00000254351 METRNQ9UJH8 293 aa11.93□□□□□ -0.5
SDC1-201ENST00000254351 STAG3L2P0CL84 134 aa11.92□□□□□ -0.5
SDC1-201ENST00000254351 STAG3L3P0CL85 134 aa11.92□□□□□ -0.5
SDC1-201ENST00000254351 USF1P22415 310 aaPredicted RBP11.92□□□□□ -0.5
SDC1-201ENST00000254351 EFNB3Q15768 340 aa11.92□□□□□ -0.5
SDC1-201ENST00000254351 SRSF7Q16629 238 aaKnown RBP eCLIP11.92□□□□□ -0.5
SDC1-201ENST00000254351 STPG3Q8N7X2 389 aa11.92□□□□□ -0.5
SDC1-201ENST00000254351 CDC42EP3Q9UKI2 254 aa11.92□□□□□ -0.5
SDC1-201ENST00000254351 OR2T8A6NH00 312 aa11.92□□□□□ -0.5
SDC1-201ENST00000254351 PRRX1P54821 245 aa11.92□□□□□ -0.5
SDC1-201ENST00000254351 FOXA3P55318 350 aaPredicted RBP11.92□□□□□ -0.5
SDC1-201ENST00000254351 Q6ZR03 302 aa11.92□□□□□ -0.5
SDC1-201ENST00000254351 ORAOV1Q8WV07 137 aa11.92□□□□□ -0.5
SDC1-201ENST00000254351 PLEKHA3Q9HB20 300 aa11.92□□□□□ -0.5
SDC1-201ENST00000254351 TPRP12270 2363 aaKnown RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 405.2 ms