RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 IGLV3-9A0A075B6K5 115 aa13.53□□□□□ -0.24
HOXD3-201ENST00000249440 KBTBD11-OT1A0A1B0GTJ5 212 aa13.53□□□□□ -0.24
HOXD3-201ENST00000249440 ARL14EPLP0DKL9 152 aa13.53□□□□□ -0.24
HOXD3-201ENST00000249440 LCN2P80188 198 aa13.53□□□□□ -0.24
HOXD3-201ENST00000249440 CT45A1Q5HYN5 189 aa13.53□□□□□ -0.24
HOXD3-201ENST00000249440 COA6Q5JTJ3 125 aaKnown RBP13.53□□□□□ -0.24
HOXD3-201ENST00000249440 MIC13Q5XKP0 118 aa13.53□□□□□ -0.24
HOXD3-201ENST00000249440 C1orf229Q6ZS94 237 aaPredicted RBP13.53□□□□□ -0.24
HOXD3-201ENST00000249440 CT45A3Q8NHU0 189 aa13.53□□□□□ -0.24
HOXD3-201ENST00000249440 SDSLQ96GA7 329 aa13.53□□□□□ -0.24
HOXD3-201ENST00000249440 RHOVQ96L33 236 aa13.53□□□□□ -0.24
HOXD3-201ENST00000249440 SAA2-SAA4A0A096LPE2 208 aa13.53□□□□□ -0.24
HOXD3-201ENST00000249440 XKRY2A2RUG3 117 aa13.53□□□□□ -0.24
HOXD3-201ENST00000249440 GATCO43716 136 aaKnown RBP13.53□□□□□ -0.24
HOXD3-201ENST00000249440 SAA2P0DJI9 122 aaPredicted RBP13.53□□□□□ -0.24
HOXD3-201ENST00000249440 BMP5P22003 454 aa13.53□□□□□ -0.24
HOXD3-201ENST00000249440 CHRNA7P36544 502 aa13.53□□□□□ -0.24
HOXD3-201ENST00000249440 GATA4P43694 442 aa13.53□□□□□ -0.24
HOXD3-201ENST00000249440 THBS3P49746 956 aa13.53□□□□□ -0.24
HOXD3-201ENST00000249440 C9orf152Q5JTZ5 239 aa13.53□□□□□ -0.24
HOXD3-201ENST00000249440 LEAP2Q969E1 77 aa13.53□□□□□ -0.24
HOXD3-201ENST00000249440 BTF3L4Q96K17 158 aa13.53□□□□□ -0.24
HOXD3-201ENST00000249440 LSM4Q9Y4Z0 139 aaKnown RBP13.53□□□□□ -0.24
HOXD3-201ENST00000249440 TRGV10A0A0A0MS01 117 aa13.52□□□□□ -0.24
HOXD3-201ENST00000249440 ACTL10Q5JWF8 245 aa13.52□□□□□ -0.24
HOXD3-201ENST00000249440 FAM222BQ8WU58 562 aa13.52□□□□□ -0.24
HOXD3-201ENST00000249440 APC2O95996 2303 aa13.52□□□□□ -0.25
HOXD3-201ENST00000249440 SELENOVP59797 346 aa13.52□□□□□ -0.25
HOXD3-201ENST00000249440 HSPE1P61604 102 aaKnown RBP13.52□□□□□ -0.25
HOXD3-201ENST00000249440 OR4A47Q6IF82 309 aa13.52□□□□□ -0.25
HOXD3-201ENST00000249440 TEPPQ6URK8 271 aa13.52□□□□□ -0.25
HOXD3-201ENST00000249440 SLC24A4Q8NFF2 622 aa13.52□□□□□ -0.25
HOXD3-201ENST00000249440 RNASEH2CQ8TDP1 164 aaKnown RBP13.52□□□□□ -0.25
HOXD3-201ENST00000249440 ADTRPQ96IZ2 230 aa13.52□□□□□ -0.25
HOXD3-201ENST00000249440 IMMP2LQ96T52 175 aa13.52□□□□□ -0.25
HOXD3-201ENST00000249440 DERL1Q9BUN8 251 aa13.52□□□□□ -0.25
HOXD3-201ENST00000249440 ENY2Q9NPA8 101 aa13.52□□□□□ -0.25
HOXD3-201ENST00000249440 TMEM14BQ9NUH8 114 aa13.52□□□□□ -0.25
HOXD3-201ENST00000249440 RNF7Q9UBF6 113 aa13.52□□□□□ -0.25
HOXD3-201ENST00000249440 FOXA2Q9Y261 457 aaPredicted RBP13.52□□□□□ -0.25
HOXD3-201ENST00000249440 DVL1O14640 695 aa13.51□□□□□ -0.25
HOXD3-201ENST00000249440 SELLP14151 372 aa13.51□□□□□ -0.25
HOXD3-201ENST00000249440 NPY1RP25929 384 aa13.51□□□□□ -0.25
HOXD3-201ENST00000249440 RAB31Q13636 194 aa13.51□□□□□ -0.25
HOXD3-201ENST00000249440 GAMTQ14353 236 aa13.51□□□□□ -0.25
HOXD3-201ENST00000249440 FAM201AQ5SY85 155 aa13.51□□□□□ -0.25
HOXD3-201ENST00000249440 IGF2-ASQ6U949 168 aa13.51□□□□□ -0.25
HOXD3-201ENST00000249440 ZMAT5Q9UDW3 170 aaKnown RBP13.51□□□□□ -0.25
HOXD3-201ENST00000249440 FUT9Q9Y231 359 aa13.51□□□□□ -0.25
HOXD3-201ENST00000249440 ICE1Q9Y2F5 2266 aa13.51□□□□□ -0.25
HOXD3-201ENST00000249440 IGF2RP11717 2491 aa13.51□□□□□ -0.25
HOXD3-201ENST00000249440 PDLIM4P50479 330 aa13.51□□□□□ -0.25
HOXD3-201ENST00000249440 MRPS11P82912 194 aaKnown RBP13.51□□□□□ -0.25
HOXD3-201ENST00000249440 DEFA6Q01524 100 aa13.51□□□□□ -0.25
HOXD3-201ENST00000249440 UTF1Q5T230 341 aa13.51□□□□□ -0.25
HOXD3-201ENST00000249440 FAM78BQ5VT40 261 aa13.51□□□□□ -0.25
HOXD3-201ENST00000249440 LYG1Q8N1E2 194 aa13.51□□□□□ -0.25
HOXD3-201ENST00000249440 OR5R1Q8NH85 324 aa13.51□□□□□ -0.25
HOXD3-201ENST00000249440 TMEM37Q8WXS4 190 aa13.51□□□□□ -0.25
HOXD3-201ENST00000249440 NCOR2Q9Y618 2525 aa13.5□□□□□ -0.25
HOXD3-201ENST00000249440 IL6RP08887 468 aaPredicted RBP13.5□□□□□ -0.25
HOXD3-201ENST00000249440 FOXL1Q12952 345 aa13.5□□□□□ -0.25
HOXD3-201ENST00000249440 ARSJQ5FYB0 599 aaPredicted RBP13.5□□□□□ -0.25
HOXD3-201ENST00000249440 IGFL3Q6UXB1 125 aa13.5□□□□□ -0.25
HOXD3-201ENST00000249440 SSMEM1Q8WWF3 244 aa13.5□□□□□ -0.25
HOXD3-201ENST00000249440 GCM1Q9NP62 436 aa13.5□□□□□ -0.25
HOXD3-201ENST00000249440 IL19Q9UHD0 177 aa13.5□□□□□ -0.25
HOXD3-201ENST00000249440 FAM215AQ9Y5M1 114 aa13.5□□□□□ -0.25
HOXD3-201ENST00000249440 CHD8Q9HCK8 2581 aa13.5□□□□□ -0.25
HOXD3-201ENST00000249440 AMBPP02760 352 aa13.5□□□□□ -0.25
HOXD3-201ENST00000249440 RHOBP62745 196 aa13.5□□□□□ -0.25
HOXD3-201ENST00000249440 AURKAIP1Q9NWT8 199 aaPredicted RBP13.5□□□□□ -0.25
HOXD3-201ENST00000249440 PKIAP61925 76 aa13.49□□□□□ -0.25
HOXD3-201ENST00000249440 TNFAIP6P98066 277 aaPredicted RBP13.49□□□□□ -0.25
HOXD3-201ENST00000249440 JOSD1Q15040 202 aaPredicted RBP13.49□□□□□ -0.25
HOXD3-201ENST00000249440 EFNB3Q15768 340 aa13.49□□□□□ -0.25
HOXD3-201ENST00000249440 STUMQ69YW2 141 aa13.49□□□□□ -0.25
HOXD3-201ENST00000249440 C1orf159Q96HA4 380 aa13.49□□□□□ -0.25
HOXD3-201ENST00000249440 SFRP2Q96HF1 295 aa13.49□□□□□ -0.25
HOXD3-201ENST00000249440 ANKRD11Q6UB99 2663 aaPredicted RBP13.49□□□□□ -0.25
HOXD3-201ENST00000249440 TSTD3H0UI37 97 aa13.48□□□□□ -0.25
HOXD3-201ENST00000249440 MT-CO2P00403 227 aa13.48□□□□□ -0.25
HOXD3-201ENST00000249440 C1QTNF9P0C862 333 aa13.48□□□□□ -0.25
HOXD3-201ENST00000249440 IL3RAP26951 378 aa13.48□□□□□ -0.25
HOXD3-201ENST00000249440 TIMP3P35625 211 aa13.48□□□□□ -0.25
HOXD3-201ENST00000249440 RPL29P47914 159 aaKnown RBP13.48□□□□□ -0.25
HOXD3-201ENST00000249440 POU2AF1Q16633 256 aa13.48□□□□□ -0.25
HOXD3-201ENST00000249440 C1orf185Q5T7R7 199 aa13.48□□□□□ -0.25
HOXD3-201ENST00000249440 RPRMLQ8N4K4 120 aa13.48□□□□□ -0.25
HOXD3-201ENST00000249440 STPG3Q8N7X2 389 aa13.48□□□□□ -0.25
HOXD3-201ENST00000249440 CORO2AQ92828 525 aa13.48□□□□□ -0.25
HOXD3-201ENST00000249440 TMEM204Q9BSN7 226 aa13.48□□□□□ -0.25
HOXD3-201ENST00000249440 IDI2-AS1Q9NZ38 188 aa13.48□□□□□ -0.25
HOXD3-201ENST00000249440 PLCE1Q9P212 2302 aa13.48□□□□□ -0.25
HOXD3-201ENST00000249440 A0A0U1RQK1 487 aa13.48□□□□□ -0.25
HOXD3-201ENST00000249440 MDFIC2A0A1B0GVS7 189 aa13.48□□□□□ -0.25
HOXD3-201ENST00000249440 ZNF320A2RRD8 509 aa13.48□□□□□ -0.25
HOXD3-201ENST00000249440 CA2P00918 260 aa13.48□□□□□ -0.25
HOXD3-201ENST00000249440 FOXC1Q12948 553 aa13.48□□□□□ -0.25
HOXD3-201ENST00000249440 TMEM144Q7Z5S9 345 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms