RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 KCNIP2Q9NS61 270 aa13.23□□□□□ -0.29
UBE3D-201ENST00000237186 URGCP-MRPS24S4R325 110 aa13.23□□□□□ -0.29
UBE3D-201ENST00000237186 MAP1BP46821 2468 aaKnown RBP13.23□□□□□ -0.29
UBE3D-201ENST00000237186 NBEAQ8NFP9 2946 aa13.23□□□□□ -0.29
UBE3D-201ENST00000237186 TRBV24-1A0A075B6N3 115 aa13.23□□□□□ -0.29
UBE3D-201ENST00000237186 TGOLN2O43493 480 aa13.23□□□□□ -0.29
UBE3D-201ENST00000237186 RPL31P62899 125 aaKnown RBP13.23□□□□□ -0.29
UBE3D-201ENST00000237186 RBPJQ06330 500 aa13.23□□□□□ -0.29
UBE3D-201ENST00000237186 ZCCHC24Q8N2G6 241 aaKnown RBP13.23□□□□□ -0.29
UBE3D-201ENST00000237186 C8orf31Q8N9H6 132 aa13.23□□□□□ -0.29
UBE3D-201ENST00000237186 GATAD1Q8WUU5 269 aa13.23□□□□□ -0.29
UBE3D-201ENST00000237186 RNASE6Q93091 150 aaKnown RBP13.23□□□□□ -0.29
UBE3D-201ENST00000237186 WFIKKN1Q96NZ8 548 aa13.23□□□□□ -0.29
UBE3D-201ENST00000237186 PARLQ9H300 379 aa13.23□□□□□ -0.29
UBE3D-201ENST00000237186 SLC35D1Q9NTN3 355 aa13.23□□□□□ -0.29
UBE3D-201ENST00000237186 BET1LQ9NYM9 111 aa13.23□□□□□ -0.29
UBE3D-201ENST00000237186 RAXQ9Y2V3 346 aa13.23□□□□□ -0.29
UBE3D-201ENST00000237186 DOCK11Q5JSL3 2073 aa13.22□□□□□ -0.29
UBE3D-201ENST00000237186 TGIF2-C20orf24A0A0A6YYL0 155 aa13.22□□□□□ -0.29
UBE3D-201ENST00000237186 PAGE4O60829 102 aa13.22□□□□□ -0.29
UBE3D-201ENST00000237186 FCN3O75636 299 aa13.22□□□□□ -0.29
UBE3D-201ENST00000237186 PRCDQ00LT1 54 aa13.22□□□□□ -0.29
UBE3D-201ENST00000237186 ARSJQ5FYB0 599 aaPredicted RBP13.22□□□□□ -0.29
UBE3D-201ENST00000237186 GCSAMLQ5JQS6 135 aa13.22□□□□□ -0.29
UBE3D-201ENST00000237186 TMEM200BQ69YZ2 307 aa13.22□□□□□ -0.29
UBE3D-201ENST00000237186 OR4F5Q8NH21 305 aa13.22□□□□□ -0.29
UBE3D-201ENST00000237186 ZNF596Q8TC21 504 aa13.22□□□□□ -0.29
UBE3D-201ENST00000237186 RND1Q92730 232 aa13.22□□□□□ -0.29
UBE3D-201ENST00000237186 NEIL1Q96FI4 390 aaPredicted RBP13.22□□□□□ -0.29
UBE3D-201ENST00000237186 ZNF714Q96N38 554 aa13.22□□□□□ -0.29
UBE3D-201ENST00000237186 OR4F4Q96R69 305 aa13.22□□□□□ -0.29
UBE3D-201ENST00000237186 VKORC1Q9BQB6 163 aa13.22□□□□□ -0.29
UBE3D-201ENST00000237186 TXNDC17Q9BRA2 123 aa13.22□□□□□ -0.29
UBE3D-201ENST00000237186 ENY2Q9NPA8 101 aa13.22□□□□□ -0.29
UBE3D-201ENST00000237186 TMEM106BQ9NUM4 274 aa13.22□□□□□ -0.29
UBE3D-201ENST00000237186 FKBP11Q9NYL4 201 aa13.22□□□□□ -0.29
UBE3D-201ENST00000237186 OR51B2Q9Y5P1 312 aa13.22□□□□□ -0.29
UBE3D-201ENST00000237186 A0A1W2PPV4 95 aa13.21□□□□□ -0.29
UBE3D-201ENST00000237186 SRRM4A7MD48 611 aaKnown RBP13.21□□□□□ -0.29
UBE3D-201ENST00000237186 SHISA9B4DS77 424 aa13.21□□□□□ -0.29
UBE3D-201ENST00000237186 STAG3L2P0CL84 134 aa13.21□□□□□ -0.29
UBE3D-201ENST00000237186 STAG3L3P0CL85 134 aa13.21□□□□□ -0.29
UBE3D-201ENST00000237186 UCNP55089 124 aa13.21□□□□□ -0.29
UBE3D-201ENST00000237186 RPL23P62829 140 aaKnown RBP13.21□□□□□ -0.29
UBE3D-201ENST00000237186 BSXQ3C1V8 233 aa13.21□□□□□ -0.29
UBE3D-201ENST00000237186 NCMAPQ5T1S8 102 aa13.21□□□□□ -0.29
UBE3D-201ENST00000237186 TEPPQ6URK8 271 aa13.21□□□□□ -0.29
UBE3D-201ENST00000237186 FAM210BQ96KR6 192 aa13.21□□□□□ -0.29
UBE3D-201ENST00000237186 TCEAL7Q9BRU2 100 aa13.21□□□□□ -0.29
UBE3D-201ENST00000237186 KAAG1Q9UBP8 84 aa13.21□□□□□ -0.29
UBE3D-201ENST00000237186 SH3BGRL2Q9UJC5 107 aa13.21□□□□□ -0.29
UBE3D-201ENST00000237186 PXMP4Q9Y6I8 212 aa13.21□□□□□ -0.29
UBE3D-201ENST00000237186 PTPRQQ9UMZ3 2332 aa13.21□□□□□ -0.3
UBE3D-201ENST00000237186 DSCAML1Q8TD84 2053 aa13.21□□□□□ -0.3
UBE3D-201ENST00000237186 PDE6DO43924 150 aa13.21□□□□□ -0.3
UBE3D-201ENST00000237186 VENTXO95231 258 aa13.21□□□□□ -0.3
UBE3D-201ENST00000237186 CA2P00918 260 aa13.21□□□□□ -0.3
UBE3D-201ENST00000237186 IGKV1-16P04430 117 aa13.21□□□□□ -0.3
UBE3D-201ENST00000237186 FAM87AP0C7U9 286 aa13.21□□□□□ -0.3
UBE3D-201ENST00000237186 RPL29P47914 159 aaKnown RBP13.21□□□□□ -0.3
UBE3D-201ENST00000237186 ZNF674Q2M3X9 581 aa13.21□□□□□ -0.3
UBE3D-201ENST00000237186 FAM71F2Q6NXP2 309 aa13.21□□□□□ -0.3
UBE3D-201ENST00000237186 LINC00311Q8N616 119 aa13.21□□□□□ -0.3
UBE3D-201ENST00000237186 OR5AN1Q8NGI8 311 aa13.21□□□□□ -0.3
UBE3D-201ENST00000237186 OSR1Q8TAX0 266 aaPredicted RBP13.21□□□□□ -0.3
UBE3D-201ENST00000237186 C11orf94C9JXX5 98 aa13.2□□□□□ -0.3
UBE3D-201ENST00000237186 J3QR06 171 aa13.2□□□□□ -0.3
UBE3D-201ENST00000237186 DEFA4P12838 97 aa13.2□□□□□ -0.3
UBE3D-201ENST00000237186 KIAA0141Q14154 515 aaPredicted RBP13.2□□□□□ -0.3
UBE3D-201ENST00000237186 PRR30Q53SZ7 412 aaPredicted RBP13.2□□□□□ -0.3
UBE3D-201ENST00000237186 MIC13Q5XKP0 118 aa13.2□□□□□ -0.3
UBE3D-201ENST00000237186 OR5B3Q8NH48 314 aa13.2□□□□□ -0.3
UBE3D-201ENST00000237186 NEUROG1Q92886 237 aa13.2□□□□□ -0.3
UBE3D-201ENST00000237186 RPUSD4Q96CM3 377 aaKnown RBP13.2□□□□□ -0.3
UBE3D-201ENST00000237186 ICE1Q9Y2F5 2266 aa13.2□□□□□ -0.3
UBE3D-201ENST00000237186 ATMQ13315 3056 aa13.2□□□□□ -0.3
UBE3D-201ENST00000237186 E7EQL1 145 aa13.19□□□□□ -0.3
UBE3D-201ENST00000237186 SMIM6P0DI80 62 aa13.19□□□□□ -0.3
UBE3D-201ENST00000237186 HOXA5P20719 270 aa13.19□□□□□ -0.3
UBE3D-201ENST00000237186 RAB31Q13636 194 aa13.19□□□□□ -0.3
UBE3D-201ENST00000237186 ADIRFQ15847 76 aa13.19□□□□□ -0.3
UBE3D-201ENST00000237186 DMRTC2Q8IXT2 367 aaPredicted RBP13.19□□□□□ -0.3
UBE3D-201ENST00000237186 CCL17Q92583 94 aa13.19□□□□□ -0.3
UBE3D-201ENST00000237186 PYGO2Q9BRQ0 406 aa13.19□□□□□ -0.3
UBE3D-201ENST00000237186 PLEKHA3Q9HB20 300 aa13.19□□□□□ -0.3
UBE3D-201ENST00000237186 PATZ1Q9HBE1 687 aaKnown RBP13.19□□□□□ -0.3
UBE3D-201ENST00000237186 DYSFO75923 2080 aa13.19□□□□□ -0.3
UBE3D-201ENST00000237186 SPTBN4Q9H254 2564 aa13.19□□□□□ -0.3
UBE3D-201ENST00000237186 TEX50A0A1B0GTY4 177 aa13.19□□□□□ -0.3
UBE3D-201ENST00000237186 INS-IGF2F8WCM5 200 aa13.19□□□□□ -0.3
UBE3D-201ENST00000237186 NDUFB3O43676 98 aa13.19□□□□□ -0.3
UBE3D-201ENST00000237186 PFN1P07737 140 aaKnown RBP13.19□□□□□ -0.3
UBE3D-201ENST00000237186 NPPCP23582 126 aa13.19□□□□□ -0.3
UBE3D-201ENST00000237186 EFNB3Q15768 340 aa13.19□□□□□ -0.3
UBE3D-201ENST00000237186 TMEM177Q53S58 311 aa13.19□□□□□ -0.3
UBE3D-201ENST00000237186 LRRC10Q5BKY1 277 aa13.19□□□□□ -0.3
UBE3D-201ENST00000237186 IQCF2Q8IXL9 164 aa13.19□□□□□ -0.3
UBE3D-201ENST00000237186 ZNRD1Q9P1U0 126 aa13.19□□□□□ -0.3
UBE3D-201ENST00000237186 PIEZO2Q9H5I5 2752 aa13.18□□□□□ -0.3
UBE3D-201ENST00000237186 H0YJW9 148 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms