RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 TRBV7-9A0A0J9YWB2 115 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 RBFOX3A6NFN3 312 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 F8WEM9 126 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 PKIAP61925 76 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 ZNF385AQ96PM9 386 aaKnown RBP5.25□□□□□ -1.57
SCN1A-217ENST00000637988 WNT10AQ9GZT5 417 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 FLVCR2Q9UPI3 526 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 NEUROG3Q9Y4Z2 214 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 ADAT3Q96EY9 351 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-217ENST00000637988 TP53RKQ96S44 253 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 FNDC1Q4ZHG4 1894 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-217ENST00000637988 GPX4P36969 197 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-217ENST00000637988 MFAP2P55001 183 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 PPP1R1AQ13522 171 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 MS4A3Q96HJ5 214 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 MTFP1Q9UDX5 166 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 CTXND1A0A1B0GTU2 59 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 GCAP28676 217 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 CLEC19AQ6UXS0 136 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 LINC00299Q6ZSB3 139 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 HIST1H4GQ99525 98 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 HS3ST3B1Q9Y662 390 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 KLF4O43474 513 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 ZNF253O75346 499 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 UCP3P55916 312 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 FAM27E3Q08E93 113 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 KCNS1Q96KK3 526 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 TCF21O43680 179 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 C11orf44Q8N8P7 122 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 TMEM105Q8N8V8 129 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 DYRK2Q92630 601 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 MRPL32Q9BYC8 188 aaKnown RBP5.25□□□□□ -1.57
SCN1A-217ENST00000637988 WNT5BQ9H1J7 359 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 IL17BQ9UHF5 180 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 WDR81Q562E7 1941 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 DOCK4Q8N1I0 1966 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 TRAV40A0A0B4J280 105 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 FOXI3A8MTJ6 420 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-217ENST00000637988 CDS2O95674 445 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 BGLAPP02818 100 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 GATA3P23771 443 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 EFNB2P52799 333 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 LINC00303Q3SY05 128 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 CD300LDQ6UXZ3 194 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 FAM216AQ8WUB2 273 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 RNF133Q8WVZ7 376 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 CYB5R1Q9UHQ9 305 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 AMY1AP04745 511 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 GPR183P32249 361 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 SSTR5P35346 364 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 TEX38Q6PEX7 206 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 WDFY1Q8IWB7 410 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 TMEM86BQ8N661 226 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 ST6GALNAC3Q8NDV1 305 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 RMI2Q96E14 147 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 TRGV11A0A075B6L2 103 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 LOC107984156A0A0G2JMH3 177 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 FAM90A10PA6NDY2 464 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 FAM90A18PA6NE21 464 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 FAM90A16PA6NEW6 464 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 FAM90A20PA6NIJ5 464 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 FAM90A8PA6NJQ4 464 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 FAM90A7PA6NKC0 464 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 FAM90A22PA8MWA6 464 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 FAM90A12PA8MX19 464 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 FAM90A5PA8MXJ8 464 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 FAM90A23PA8MXZ1 464 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 NTN1O95631 604 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 FAM90A15PP0C7V4 464 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 FAM90A13PP0C7W8 464 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 FAM90A14PP0C7W9 464 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 FAM90A24PP0C7X0 464 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 APOC4P55056 127 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 ARL17AQ8IVW1 177 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 OR11H4Q8NGC9 324 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 OR5AN1Q8NGI8 311 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 VN1R17PQ8TDU5 208 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 KCNE5Q9UJ90 142 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 KLK13Q9UKR3 277 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 TRAV8-6A0A0B4J262 113 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 ANKRD20A5PA0PJZ0 165 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 CD74P04233 296 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 JKAMPQ9P055 326 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 IL36RNQ9UBH0 155 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 GAGE10A6NGK3 116 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 PRR32B1ATL7 298 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 CD8AP01732 235 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 C3orf36Q3SXR2 165 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 DNLZQ5SXM8 178 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 SP5Q6BEB4 398 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-217ENST00000637988 PQLC2Q6ZP29 291 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 POC1AQ8NBT0 407 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 HEATR5AQ86XA9 2040 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 ZG16O60844 167 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 MMP9P14780 707 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 MRPL54Q6P161 138 aaKnown RBP5.24□□□□□ -1.57
SCN1A-217ENST00000637988 ZNF818PQ6ZRF7 136 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 TPRX1Q8N7U7 411 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 OR5AU1Q8NGC0 362 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 RHOVQ96L33 236 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 1094.2 ms