RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 G6PCP35575 357 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 MAGEA5P43359 124 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 TAS2R45P59539 299 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 SELENOVP59797 346 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF90Q03938 601 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 TMEM249Q2WGJ8 235 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 COA6Q5JTJ3 125 aaKnown RBP3.34□□□□□ -1.87
SCN1A-214ENST00000637038 FAM78BQ5VT40 261 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 Q6P435 159 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 MRPL52Q86TS9 123 aaKnown RBP3.34□□□□□ -1.87
SCN1A-214ENST00000637038 BEND2Q8NDZ0 799 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 GPHA2Q96T91 129 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 S1PR3Q99500 378 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 PYGO2Q9BRQ0 406 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 C2orf88Q9BSF0 95 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 NPCDR1Q9BY65 106 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 PRO1933Q9H354 126 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 ZDHHC11Q9H8X9 412 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 MBNL3Q9NUK0 354 aaKnown RBP3.34□□□□□ -1.87
SCN1A-214ENST00000637038 RPH3ALQ9UNE2 315 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 FUT9Q9Y231 359 aa3.34□□□□□ -1.87
SCN1A-214ENST00000637038 TRBV9A0A0B4J1U6 114 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 TRGV8A0A0C4DH27 118 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 IQCF6A8MYZ5 107 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 SS18L1O75177 396 aaPredicted RBP3.34□□□□□ -1.88
SCN1A-214ENST00000637038 HBZP02008 142 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 SP1P08047 785 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 COL10A1Q03692 680 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 DCAF10Q5QP82 559 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 SPATA46Q5T0L3 261 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 OR51G1Q8NGK1 321 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 OR10G8Q8NGN5 311 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 OR4S2Q8NH73 311 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 RAB1CQ92928 201 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 PCGF1Q9BSM1 259 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 NDUFAF3Q9BU61 184 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 SAMD10Q9BYL1 202 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 KRTAP3-3Q9BYR6 98 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 KRTAP3-2Q9BYR7 98 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 PLEKHA3Q9HB20 300 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 ZNF71Q9NQZ8 489 aaPredicted RBP3.34□□□□□ -1.88
SCN1A-214ENST00000637038 DEPPQ9NTK1 212 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 FKBP11Q9NYL4 201 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 OR6C3Q9NZP0 311 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 IL36RNQ9UBH0 155 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 CLN8Q9UBY8 286 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 PCNX1Q96RV3 2341 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 VPS13CQ709C8 3753 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 CABIN1Q9Y6J0 2220 aa3.34□□□□□ -1.88
SCN1A-214ENST00000637038 DSPP15924 2871 aaKnown RBP3.34□□□□□ -1.88
SCN1A-214ENST00000637038 A0A0G2JRQ6 117 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 ODAMA1E959 279 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 PGPEP1LA6NFU8 196 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 TMEM238C9JI98 176 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 M0R143 59 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 ITGB1BP1O14713 200 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 CDIPTO14735 213 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 RBFOX2O43251 390 aaKnown RBP eCLIP3.33□□□□□ -1.88
SCN1A-214ENST00000637038 PFN1P07737 140 aaKnown RBP3.33□□□□□ -1.88
SCN1A-214ENST00000637038 OPRK1P41145 380 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 CDKN1BP46527 198 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 ATP5IP56385 69 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-214ENST00000637038 MRPS11P82912 194 aaKnown RBP3.33□□□□□ -1.88
SCN1A-214ENST00000637038 TMEM30BQ3MIR4 351 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 SHISA2Q6UWI4 295 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 SLC25A40Q8TBP6 338 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 SDSLQ96GA7 329 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 MS4A10Q96PG2 267 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 TMEM167BQ9NRX6 74 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 ZNF586Q9NXT0 402 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 SLC45A2Q9UMX9 530 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 MT-ND6P03923 174 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 ADIPOQQ15848 244 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 TIGITQ495A1 244 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 ACTL10Q5JWF8 245 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 BTNL3Q6UXE8 466 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 BAGE3Q86Y29 109 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 BAGE2Q86Y30 109 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 FAM90A1Q86YD7 464 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 OR52E5Q8NH55 327 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 OR1L1Q8NH94 360 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 CMTM2Q8TAZ6 248 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 MEGF10Q96KG7 1140 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 RNF2Q99496 336 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 CHRDL1Q9BU40 450 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 FSCN3Q9NQT6 498 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 JPT1Q9UK76 154 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 PSG11Q9UQ72 335 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 DCHS2Q6V1P9 2916 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 C12orf77C9JDV5 145 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 CCL21O00585 134 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 S1PR2O95136 353 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 AMBPP02760 352 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 WT1P19544 449 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-214ENST00000637038 CHRNB4P30926 498 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 NTF4P34130 210 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 EDDM3BP56851 147 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 Q0VFX4 171 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 ZNF726P1Q15940 193 aa3.33□□□□□ -1.88
SCN1A-214ENST00000637038 TMEM183BQ1AE95 376 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms