RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 TSSC4Q9Y5U2 329 aaPredicted RBP14.23□□□□□ -0.13
CLN3-243ENST00000635973 WSB1Q9Y6I7 421 aa14.23□□□□□ -0.13
CLN3-243ENST00000635973 S1PR2O95136 353 aa14.22□□□□□ -0.13
CLN3-243ENST00000635973 NQO2P16083 231 aa14.22□□□□□ -0.13
CLN3-243ENST00000635973 TAS2R31P59538 309 aa14.22□□□□□ -0.13
CLN3-243ENST00000635973 RND3P61587 244 aa14.22□□□□□ -0.13
CLN3-243ENST00000635973 PJVKQ0ZLH3 352 aa14.22□□□□□ -0.13
CLN3-243ENST00000635973 SURF2Q15527 256 aaPredicted RBP14.22□□□□□ -0.13
CLN3-243ENST00000635973 ZNF562Q6V9R5 426 aa14.22□□□□□ -0.13
CLN3-243ENST00000635973 DMBX1Q8NFW5 382 aa14.22□□□□□ -0.13
CLN3-243ENST00000635973 MRAPQ8TCY5 172 aa14.22□□□□□ -0.13
CLN3-243ENST00000635973 RHOVQ96L33 236 aa14.22□□□□□ -0.13
CLN3-243ENST00000635973 PLEKHA2Q9HB19 425 aa14.22□□□□□ -0.13
CLN3-243ENST00000635973 TRAV41A0A0B4J266 112 aa14.21□□□□□ -0.13
CLN3-243ENST00000635973 G3V318 75 aa14.21□□□□□ -0.13
CLN3-243ENST00000635973 MPPED1O15442 326 aa14.21□□□□□ -0.13
CLN3-243ENST00000635973 KBTBD11O94819 623 aa14.21□□□□□ -0.13
CLN3-243ENST00000635973 OR2A4O95047 310 aa14.21□□□□□ -0.13
CLN3-243ENST00000635973 CTSDP07339 412 aaPredicted RBP14.21□□□□□ -0.13
CLN3-243ENST00000635973 LPAR6P43657 344 aa14.21□□□□□ -0.13
CLN3-243ENST00000635973 TMEM267Q0VDI3 215 aaPredicted RBP14.21□□□□□ -0.13
CLN3-243ENST00000635973 TNXAQ16473 311 aa14.21□□□□□ -0.13
CLN3-243ENST00000635973 BAK1Q16611 211 aa14.21□□□□□ -0.13
CLN3-243ENST00000635973 PRSS8Q16651 343 aa14.21□□□□□ -0.13
CLN3-243ENST00000635973 TEX38Q6PEX7 206 aa14.21□□□□□ -0.13
CLN3-243ENST00000635973 LINC00299Q6ZSB3 139 aa14.21□□□□□ -0.13
CLN3-243ENST00000635973 COMMD1Q8N668 190 aa14.21□□□□□ -0.13
CLN3-243ENST00000635973 DEDD2Q8WXF8 326 aa14.21□□□□□ -0.13
CLN3-243ENST00000635973 S100ZQ8WXG8 99 aa14.21□□□□□ -0.13
CLN3-243ENST00000635973 SCGB3A2Q96PL1 93 aa14.21□□□□□ -0.13
CLN3-243ENST00000635973 OR2A7Q96R45 310 aa14.21□□□□□ -0.13
CLN3-243ENST00000635973 PHB2Q99623 299 aa14.21□□□□□ -0.13
CLN3-243ENST00000635973 FAM103A1Q9BTL3 118 aaKnown RBP14.21□□□□□ -0.13
CLN3-243ENST00000635973 ZNF430Q9H8G1 570 aaPredicted RBP14.21□□□□□ -0.13
CLN3-243ENST00000635973 ZNF580Q9UK33 172 aa14.21□□□□□ -0.13
CLN3-243ENST00000635973 LINC00854A0A1B0GVQ3 168 aa14.2□□□□□ -0.14
CLN3-243ENST00000635973 CXorf66Q5JRM2 361 aaPredicted RBP14.2□□□□□ -0.14
CLN3-243ENST00000635973 MMD2Q8IY49 270 aa14.2□□□□□ -0.14
CLN3-243ENST00000635973 MRGPRFQ96AM1 343 aa14.2□□□□□ -0.14
CLN3-243ENST00000635973 AKIP1Q9NQ31 210 aa14.2□□□□□ -0.14
CLN3-243ENST00000635973 FBXO7Q9Y3I1 522 aa14.2□□□□□ -0.14
CLN3-243ENST00000635973 ARPC1BO15143 372 aaKnown RBP14.19□□□□□ -0.14
CLN3-243ENST00000635973 SERPINE2P07093 398 aa14.19□□□□□ -0.14
CLN3-243ENST00000635973 IL7P13232 177 aa14.19□□□□□ -0.14
CLN3-243ENST00000635973 RPA2P15927 270 aa14.19□□□□□ -0.14
CLN3-243ENST00000635973 OR4A47Q6IF82 309 aa14.19□□□□□ -0.14
CLN3-243ENST00000635973 UNQ5815/PRO19632Q6UWF5 114 aa14.19□□□□□ -0.14
CLN3-243ENST00000635973 PUSL1Q8N0Z8 303 aaKnown RBP14.19□□□□□ -0.14
CLN3-243ENST00000635973 SDHCQ99643 169 aaPredicted RBP14.19□□□□□ -0.14
CLN3-243ENST00000635973 FAM212BQ9NTI7 297 aaPredicted RBP14.19□□□□□ -0.14
CLN3-243ENST00000635973 TMEM140Q9NV12 185 aa14.19□□□□□ -0.14
CLN3-243ENST00000635973 TEX13DA0A0J9YY54 714 aaPredicted RBP14.18□□□□□ -0.14
CLN3-243ENST00000635973 A0A1W2PN81 502 aa14.18□□□□□ -0.14
CLN3-243ENST00000635973 MARCH11A6NNE9 402 aa14.18□□□□□ -0.14
CLN3-243ENST00000635973 CENPXA8MT69 81 aa14.18□□□□□ -0.14
CLN3-243ENST00000635973 H0Y980 276 aa14.18□□□□□ -0.14
CLN3-243ENST00000635973 KRASP01116 189 aa14.18□□□□□ -0.14
CLN3-243ENST00000635973 IGLL1P15814 213 aa14.18□□□□□ -0.14
CLN3-243ENST00000635973 CHRNA7P36544 502 aa14.18□□□□□ -0.14
CLN3-243ENST00000635973 LFNGQ8NES3 379 aa14.18□□□□□ -0.14
CLN3-243ENST00000635973 OR4A5Q8NH83 315 aa14.18□□□□□ -0.14
CLN3-243ENST00000635973 TMEM167AQ8TBQ9 72 aa14.18□□□□□ -0.14
CLN3-243ENST00000635973 C5orf66Q9H5L9 145 aa14.18□□□□□ -0.14
CLN3-243ENST00000635973 BET1LQ9NYM9 111 aa14.18□□□□□ -0.14
CLN3-243ENST00000635973 FOXA2Q9Y261 457 aaPredicted RBP14.18□□□□□ -0.14
CLN3-243ENST00000635973 NOTCH3Q9UM47 2321 aa14.18□□□□□ -0.14
CLN3-243ENST00000635973 C3orf85A0A1B0GTC6 90 aa14.17□□□□□ -0.14
CLN3-243ENST00000635973 NAP1L6A6NFF2 107 aa14.17□□□□□ -0.14
CLN3-243ENST00000635973 ELANEP08246 267 aa14.17□□□□□ -0.14
CLN3-243ENST00000635973 G6PCP35575 357 aa14.17□□□□□ -0.14
CLN3-243ENST00000635973 CRIP2P52943 208 aaPredicted RBP14.17□□□□□ -0.14
CLN3-243ENST00000635973 RPL8P62917 257 aaKnown RBP14.17□□□□□ -0.14
CLN3-243ENST00000635973 SSBP2P81877 361 aaPredicted RBP14.17□□□□□ -0.14
CLN3-243ENST00000635973 CFHR3Q02985 330 aa14.17□□□□□ -0.14
CLN3-243ENST00000635973 FOXE3Q13461 319 aa14.17□□□□□ -0.14
CLN3-243ENST00000635973 POU2AF1Q16633 256 aa14.17□□□□□ -0.14
CLN3-243ENST00000635973 TRIM16LQ309B1 348 aa14.17□□□□□ -0.14
CLN3-243ENST00000635973 ZNF585BQ52M93 769 aa14.17□□□□□ -0.14
CLN3-243ENST00000635973 TCTEX1D4Q5JR98 221 aa14.17□□□□□ -0.14
CLN3-243ENST00000635973 TMEM65Q6PI78 240 aa14.17□□□□□ -0.14
CLN3-243ENST00000635973 WFDC9Q8NEX5 89 aa14.17□□□□□ -0.14
CLN3-243ENST00000635973 SRSF12Q8WXF0 261 aaKnown RBP14.17□□□□□ -0.14
CLN3-243ENST00000635973 RTBDNQ9BSG5 229 aaPredicted RBP14.17□□□□□ -0.14
CLN3-243ENST00000635973 AURKAIP1Q9NWT8 199 aaPredicted RBP14.17□□□□□ -0.14
CLN3-243ENST00000635973 GPR132Q9UNW8 380 aa14.17□□□□□ -0.14
CLN3-243ENST00000635973 VSIG4Q9Y279 399 aa14.17□□□□□ -0.14
CLN3-243ENST00000635973 IGHG4P01861 327 aa14.16□□□□□ -0.14
CLN3-243ENST00000635973 APELAP0DMC3 54 aa14.16□□□□□ -0.14
CLN3-243ENST00000635973 EGR2P11161 476 aaPredicted RBP14.16□□□□□ -0.14
CLN3-243ENST00000635973 CD40LGP29965 261 aa14.16□□□□□ -0.14
CLN3-243ENST00000635973 MAS1LP35410 378 aa14.16□□□□□ -0.14
CLN3-243ENST00000635973 MRGPRG-AS1Q2M3A8 158 aa14.16□□□□□ -0.14
CLN3-243ENST00000635973 AKIRIN2Q53H80 203 aa14.16□□□□□ -0.14
CLN3-243ENST00000635973 C10orf55Q5SWW7 151 aa14.16□□□□□ -0.14
CLN3-243ENST00000635973 TMED4Q7Z7H5 227 aa14.16□□□□□ -0.14
CLN3-243ENST00000635973 TP53RKQ96S44 253 aa14.16□□□□□ -0.14
CLN3-243ENST00000635973 CCDC32Q9BV29 185 aa14.16□□□□□ -0.14
CLN3-243ENST00000635973 WDR12Q9GZL7 423 aaKnown RBP14.16□□□□□ -0.14
CLN3-243ENST00000635973 NAA60Q9H7X0 242 aa14.16□□□□□ -0.14
CLN3-243ENST00000635973 NUBP2Q9Y5Y2 271 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms