RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 MS4A5Q9H3V2 200 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 GFOD1Q9NXC2 390 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 TCF19Q9Y242 345 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 LSM4Q9Y4Z0 139 aaKnown RBP10.54□□□□□ -0.72
LINC00540-203ENST00000631321 TRAV3A0A0B4J244 114 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 A0A1W2PPV4 95 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 STAG3L2P0CL84 134 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 STAG3L3P0CL85 134 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 LCN2P80188 198 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 C17orf58Q2M2W7 97 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 SPRNQ5BIV9 151 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 TIMM23BQ5SRD1 257 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 MOGAT3Q86VF5 341 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 ZNRF1Q8ND25 227 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 OR4S2Q8NH73 311 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 PLPPR2Q96GM1 343 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 SLC31A2O15432 143 aa10.53□□□□□ -0.72
LINC00540-203ENST00000631321 GLRXP35754 106 aa10.53□□□□□ -0.72
LINC00540-203ENST00000631321 GATA4P43694 442 aa10.53□□□□□ -0.72
LINC00540-203ENST00000631321 ATP5G3P48201 142 aa10.53□□□□□ -0.72
LINC00540-203ENST00000631321 IGF2-ASQ6U949 168 aa10.53□□□□□ -0.72
LINC00540-203ENST00000631321 C1orf229Q6ZS94 237 aaPredicted RBP10.53□□□□□ -0.72
LINC00540-203ENST00000631321 VKORC1L1Q8N0U8 176 aa10.53□□□□□ -0.72
LINC00540-203ENST00000631321 CISD2Q8N5K1 135 aaKnown RBP10.53□□□□□ -0.72
LINC00540-203ENST00000631321 OR5R1Q8NH85 324 aa10.53□□□□□ -0.72
LINC00540-203ENST00000631321 C1orf159Q96HA4 380 aa10.53□□□□□ -0.72
LINC00540-203ENST00000631321 IMMP2LQ96T52 175 aa10.53□□□□□ -0.72
LINC00540-203ENST00000631321 RAB9BQ9NP90 201 aa10.53□□□□□ -0.72
LINC00540-203ENST00000631321 ZMAT5Q9UDW3 170 aaKnown RBP10.53□□□□□ -0.72
LINC00540-203ENST00000631321 PXMP4Q9Y6I8 212 aa10.53□□□□□ -0.72
LINC00540-203ENST00000631321 DOCK11Q5JSL3 2073 aa10.53□□□□□ -0.72
LINC00540-203ENST00000631321 IGLV3-9A0A075B6K5 115 aa10.53□□□□□ -0.72
LINC00540-203ENST00000631321 A0A1W2PPQ1 181 aa10.53□□□□□ -0.72
LINC00540-203ENST00000631321 C15orf61A6NNL5 157 aa10.53□□□□□ -0.72
LINC00540-203ENST00000631321 DVL1O14640 695 aa10.53□□□□□ -0.72
LINC00540-203ENST00000631321 ZNF83P51522 516 aa10.53□□□□□ -0.72
LINC00540-203ENST00000631321 KLF3P57682 345 aaPredicted RBP10.53□□□□□ -0.72
LINC00540-203ENST00000631321 KCNIP4Q6PIL6 250 aa10.53□□□□□ -0.72
LINC00540-203ENST00000631321 DEFB124Q8NES8 71 aa10.53□□□□□ -0.72
LINC00540-203ENST00000631321 FOXA2Q9Y261 457 aaPredicted RBP10.53□□□□□ -0.72
LINC00540-203ENST00000631321 CXorf1O96002 111 aa10.52□□□□□ -0.73
LINC00540-203ENST00000631321 CRYAAP02489 173 aa10.52□□□□□ -0.73
LINC00540-203ENST00000631321 AMBPP02760 352 aa10.52□□□□□ -0.73
LINC00540-203ENST00000631321 CT45A1Q5HYN5 189 aa10.52□□□□□ -0.73
LINC00540-203ENST00000631321 C9orf152Q5JTZ5 239 aa10.52□□□□□ -0.73
LINC00540-203ENST00000631321 ZNF474Q6S9Z5 364 aaPredicted RBP10.52□□□□□ -0.73
LINC00540-203ENST00000631321 CT45A3Q8NHU0 189 aa10.52□□□□□ -0.73
LINC00540-203ENST00000631321 FAM234AQ9H0X4 552 aa10.52□□□□□ -0.73
LINC00540-203ENST00000631321 CHODLQ9H9P2 273 aa10.52□□□□□ -0.73
LINC00540-203ENST00000631321 PATZ1Q9HBE1 687 aaKnown RBP10.52□□□□□ -0.73
LINC00540-203ENST00000631321 TMEM14BQ9NUH8 114 aa10.52□□□□□ -0.73
LINC00540-203ENST00000631321 KBTBD11-OT1A0A1B0GTJ5 212 aa10.52□□□□□ -0.73
LINC00540-203ENST00000631321 XKRY2A2RUG3 117 aa10.52□□□□□ -0.73
LINC00540-203ENST00000631321 NDUFB4O95168 129 aa10.52□□□□□ -0.73
LINC00540-203ENST00000631321 GAMTQ14353 236 aa10.52□□□□□ -0.73
LINC00540-203ENST00000631321 JOSD1Q15040 202 aaPredicted RBP10.52□□□□□ -0.73
LINC00540-203ENST00000631321 POU2AF1Q16633 256 aa10.52□□□□□ -0.73
LINC00540-203ENST00000631321 DEFB109BQ30KR1 87 aa10.52□□□□□ -0.73
LINC00540-203ENST00000631321 CST9LP1Q5W188 147 aa10.52□□□□□ -0.73
LINC00540-203ENST00000631321 MIC13Q5XKP0 118 aa10.52□□□□□ -0.73
LINC00540-203ENST00000631321 TMEM144Q7Z5S9 345 aa10.52□□□□□ -0.73
LINC00540-203ENST00000631321 ABHD12Q8N2K0 398 aa10.52□□□□□ -0.73
LINC00540-203ENST00000631321 ITLN1Q8WWA0 313 aa10.52□□□□□ -0.73
LINC00540-203ENST00000631321 SDSLQ96GA7 329 aa10.52□□□□□ -0.73
LINC00540-203ENST00000631321 BTF3L4Q96K17 158 aa10.52□□□□□ -0.73
LINC00540-203ENST00000631321 NPVFQ9HCQ7 196 aa10.52□□□□□ -0.73
LINC00540-203ENST00000631321 SPAARA0A1B0GVQ0 90 aa10.51□□□□□ -0.73
LINC00540-203ENST00000631321 M0R1B8 84 aa10.51□□□□□ -0.73
LINC00540-203ENST00000631321 RD3LP0DJH9 198 aa10.51□□□□□ -0.73
LINC00540-203ENST00000631321 ARL14EPLP0DKL9 152 aa10.51□□□□□ -0.73
LINC00540-203ENST00000631321 THBS3P49746 956 aa10.51□□□□□ -0.73
LINC00540-203ENST00000631321 NUBP1P53384 320 aa10.51□□□□□ -0.73
LINC00540-203ENST00000631321 UBE2G2P60604 165 aa10.51□□□□□ -0.73
LINC00540-203ENST00000631321 UTF1Q5T230 341 aa10.51□□□□□ -0.73
LINC00540-203ENST00000631321 ADTRPQ96IZ2 230 aa10.51□□□□□ -0.73
LINC00540-203ENST00000631321 LINC00574Q9H8X3 128 aa10.51□□□□□ -0.73
LINC00540-203ENST00000631321 SAA2-SAA4A0A096LPE2 208 aa10.5□□□□□ -0.73
LINC00540-203ENST00000631321 FNDC10F2Z333 226 aa10.5□□□□□ -0.73
LINC00540-203ENST00000631321 SAA2P0DJI9 122 aaPredicted RBP10.5□□□□□ -0.73
LINC00540-203ENST00000631321 HSPE1P61604 102 aaKnown RBP10.5□□□□□ -0.73
LINC00540-203ENST00000631321 PKIAP61925 76 aa10.5□□□□□ -0.73
LINC00540-203ENST00000631321 FOXL1Q12952 345 aa10.5□□□□□ -0.73
LINC00540-203ENST00000631321 ARSJQ5FYB0 599 aaPredicted RBP10.5□□□□□ -0.73
LINC00540-203ENST00000631321 ZNF439Q8NDP4 499 aa10.5□□□□□ -0.73
LINC00540-203ENST00000631321 DERL1Q9BUN8 251 aa10.5□□□□□ -0.73
LINC00540-203ENST00000631321 SPRY3O43610 288 aa10.5□□□□□ -0.73
LINC00540-203ENST00000631321 IGHV3-7P01780 117 aa10.5□□□□□ -0.73
LINC00540-203ENST00000631321 IL6RP08887 468 aaPredicted RBP10.5□□□□□ -0.73
LINC00540-203ENST00000631321 PAX1P15863 534 aa10.5□□□□□ -0.73
LINC00540-203ENST00000631321 CHRNA7P36544 502 aa10.5□□□□□ -0.73
LINC00540-203ENST00000631321 RPL15P61313 204 aaKnown RBP10.5□□□□□ -0.73
LINC00540-203ENST00000631321 STUMQ69YW2 141 aa10.5□□□□□ -0.73
LINC00540-203ENST00000631321 ZADH2Q8N4Q0 377 aa10.5□□□□□ -0.73
LINC00540-203ENST00000631321 RHOVQ96L33 236 aa10.5□□□□□ -0.73
LINC00540-203ENST00000631321 INTS1Q8N201 2190 aaKnown RBP10.5□□□□□ -0.73
LINC00540-203ENST00000631321 PRRC2CQ9Y520 2896 aaKnown RBP10.5□□□□□ -0.73
LINC00540-203ENST00000631321 SELLP14151 372 aa10.49□□□□□ -0.73
LINC00540-203ENST00000631321 NPY1RP25929 384 aa10.49□□□□□ -0.73
LINC00540-203ENST00000631321 IL3RAP26951 378 aa10.49□□□□□ -0.73
LINC00540-203ENST00000631321 RPL29P47914 159 aaKnown RBP10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 106.9 ms