RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 NR2C2APQ86WQ0 139 aa9.04□□□□□ -0.96
UPF3B-204ENST00000619445 GPHB5Q86YW7 130 aa9.04□□□□□ -0.96
UPF3B-204ENST00000619445 PUSL1Q8N0Z8 303 aaKnown RBP9.04□□□□□ -0.96
UPF3B-204ENST00000619445 RHBDL2Q9NX52 303 aa9.04□□□□□ -0.96
UPF3B-204ENST00000619445 CEPT1Q9Y6K0 416 aa9.04□□□□□ -0.96
UPF3B-204ENST00000619445 DYNC2H1Q8NCM8 4307 aaKnown RBP9.04□□□□□ -0.96
UPF3B-204ENST00000619445 J3QRK9 145 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 OR2J3O76001 311 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 CRYGCP07315 174 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 ZNF735P0CB33 412 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 CBX5P45973 191 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 CD81P60033 236 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 RPL8P62917 257 aaKnown RBP9.03□□□□□ -0.96
UPF3B-204ENST00000619445 DEFA5Q01523 94 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 CATR1Q13166 79 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 KLK9Q2XQG4 91 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 ANKRD55Q3KP44 614 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 SLC16A13Q7RTY0 426 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 SPARTQ8N0X7 666 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 MFSD4AQ8N468 514 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 BEST4Q8NFU0 473 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 CD300LFQ8TDQ1 290 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 NUDCD2Q8WVJ2 157 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 EEF1AKMT3Q96AZ1 226 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 CXorf58Q96LI9 332 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 FYTTD1Q96QD9 318 aaKnown RBP9.03□□□□□ -0.96
UPF3B-204ENST00000619445 NEURL2Q9BR09 285 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 SRSF8Q9BRL6 282 aaKnown RBP9.03□□□□□ -0.96
UPF3B-204ENST00000619445 ZC4H2Q9NQZ6 224 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 DIABLOQ9NR28 239 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 BET1LQ9NYM9 111 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 THYN1Q9P016 225 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 FBXL7Q9UJT9 491 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 KLK9Q9UKQ9 250 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 SPATA2Q9UM82 520 aa9.03□□□□□ -0.96
UPF3B-204ENST00000619445 RRP15Q9Y3B9 282 aaKnown RBP9.03□□□□□ -0.96
UPF3B-204ENST00000619445 TRBV7-1A0A0A6YYK4 115 aa9.02□□□□□ -0.97
UPF3B-204ENST00000619445 IGKV1D-13A0A0B4J2D9 117 aa9.02□□□□□ -0.97
UPF3B-204ENST00000619445 C2orf70A6NJV1 201 aa9.02□□□□□ -0.97
UPF3B-204ENST00000619445 TEX22C9J3V5 150 aa9.02□□□□□ -0.97
UPF3B-204ENST00000619445 RBMXL2O75526 392 aaKnown RBP9.02□□□□□ -0.97
UPF3B-204ENST00000619445 IGLV2-14P01704 120 aa9.02□□□□□ -0.97
UPF3B-204ENST00000619445 PRH1P02810 166 aa9.02□□□□□ -0.97
UPF3B-204ENST00000619445 IGKV1-13P0DP09 117 aa9.02□□□□□ -0.97
UPF3B-204ENST00000619445 DEFA4P12838 97 aa9.02□□□□□ -0.97
UPF3B-204ENST00000619445 PSMB6P28072 239 aa9.02□□□□□ -0.97
UPF3B-204ENST00000619445 RPL30P62888 115 aaKnown RBP9.02□□□□□ -0.97
UPF3B-204ENST00000619445 EIF4EBP1Q13541 118 aaPredicted RBP9.02□□□□□ -0.97
UPF3B-204ENST00000619445 DEFB114Q30KQ6 69 aa9.02□□□□□ -0.97
UPF3B-204ENST00000619445 CD300EQ496F6 205 aaPredicted RBP9.02□□□□□ -0.97
UPF3B-204ENST00000619445 OR2B11Q5JQS5 317 aa9.02□□□□□ -0.97
UPF3B-204ENST00000619445 THOC7Q6I9Y2 204 aaKnown RBP9.02□□□□□ -0.97
UPF3B-204ENST00000619445 LGALS14Q8TCE9 139 aa9.02□□□□□ -0.97
UPF3B-204ENST00000619445 MARC2Q969Z3 335 aa9.02□□□□□ -0.97
UPF3B-204ENST00000619445 TAS2R8Q9NYW2 309 aa9.02□□□□□ -0.97
UPF3B-204ENST00000619445 ADAM30Q9UKF2 790 aa9.02□□□□□ -0.97
UPF3B-204ENST00000619445 ELF5Q9UKW6 265 aaPredicted RBP9.02□□□□□ -0.97
UPF3B-204ENST00000619445 A8MWP6 167 aa9.01□□□□□ -0.97
UPF3B-204ENST00000619445 IL6RP08887 468 aaPredicted RBP9.01□□□□□ -0.97
UPF3B-204ENST00000619445 FOLR2P14207 255 aa9.01□□□□□ -0.97
UPF3B-204ENST00000619445 HLA-GP17693 338 aa9.01□□□□□ -0.97
UPF3B-204ENST00000619445 ARL3P36405 182 aa9.01□□□□□ -0.97
UPF3B-204ENST00000619445 TAS2R31P59538 309 aa9.01□□□□□ -0.97
UPF3B-204ENST00000619445 C10orf55Q5SWW7 151 aa9.01□□□□□ -0.97
UPF3B-204ENST00000619445 HSD17B13Q7Z5P4 300 aaPredicted RBP9.01□□□□□ -0.97
UPF3B-204ENST00000619445 HOGA1Q86XE5 327 aa9.01□□□□□ -0.97
UPF3B-204ENST00000619445 CROCCP3Q8IVE0 287 aa9.01□□□□□ -0.97
UPF3B-204ENST00000619445 VKORC1L1Q8N0U8 176 aa9.01□□□□□ -0.97
UPF3B-204ENST00000619445 SECTM1Q8WVN6 248 aa9.01□□□□□ -0.97
UPF3B-204ENST00000619445 IZUMO1RA6ND01 250 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 HMX3A6NHT5 357 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 OR11H12B2RN74 326 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 SSX5O60225 188 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 JTBO76095 146 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 HPRT1P00492 218 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 PPYP01298 95 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 NQO2P16083 231 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 CTRB1P17538 263 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 FCGR2CP31995 323 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 SDC2P34741 201 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 POU2AF1Q16633 256 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 GUCA2BQ16661 112 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 TIMM50Q3ZCQ8 353 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 ZFAND6Q6FIF0 208 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 CTRB2Q6GPI1 263 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 ZNF773Q6PK81 442 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 LINC00322Q6ZN03 302 aaPredicted RBP9□□□□□ -0.97
UPF3B-204ENST00000619445 SPAG16Q8N0X2 631 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 OR13F1Q8NGS4 319 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 COMMD5Q9GZQ3 224 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 HIPK2Q9H2X6 1198 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 PLEKHA3Q9HB20 300 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 HRASLSQ9HDD0 168 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 CSMD3Q7Z407 3707 aa9□□□□□ -0.97
UPF3B-204ENST00000619445 TRAV18A0A075B6X5 111 aa8.99□□□□□ -0.97
UPF3B-204ENST00000619445 TRAV25A0A0B4J276 109 aa8.99□□□□□ -0.97
UPF3B-204ENST00000619445 SMIM30A4D0T7 59 aa8.99□□□□□ -0.97
UPF3B-204ENST00000619445 ZNF785A8K8V0 405 aa8.99□□□□□ -0.97
UPF3B-204ENST00000619445 PPP5D1E7EU14 171 aa8.99□□□□□ -0.97
UPF3B-204ENST00000619445 OR2C1O95371 312 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms