RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 OR10J4P0C629 311 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 CD1BP29016 333 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 CX3CL1P78423 397 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 C20orf204Q6ZNR8 217 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 ZBTB34Q8NCN2 500 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 C11orf52Q96A22 123 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 SMIM12Q96EX1 92 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 UHRF2Q96PU4 802 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 UCN2Q96RP3 112 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 CSTL1Q9H114 145 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 MTCH1Q9NZJ7 389 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 OR1A1Q9P1Q5 309 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 CLN8Q9UBY8 286 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 SLC17A3O00476 420 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 CIDEAO60543 219 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 MT-CO2P00403 227 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 CA2P00918 260 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 STAG3L2P0CL84 134 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 STAG3L3P0CL85 134 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 B4GALT1P15291 398 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 GPM6AP51674 278 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 NIT1Q86X76 327 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 WNT10AQ9GZT5 417 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 SEPSECSQ9HD40 501 aaKnown RBP9.06□□□□□ -0.96
UPF3A-212ENST00000619079 MSRB2Q9Y3D2 182 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 TRGV10A0A0A0MS01 117 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 TRAV38-1A0A0B4J264 116 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 C9orf172C9J069 976 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 P0C879 139 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 ARL14EPLP0DKL9 152 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 SRD5A2P31213 254 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 OPRK1P41145 380 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 GFRA1P56159 465 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 LDLRAD2Q5SZI1 272 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 OR8I2Q8N0Y5 310 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 DRAM1Q8N682 238 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 ST6GALNAC3Q8NDV1 305 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 FOXB1Q99853 325 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 IL36RNQ9UBH0 155 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 GJE1A6NN92 205 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 HSBP1L1C9JCN9 74 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 K7EN84 100 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 TMEM11P17152 192 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 TMEM136Q6ZRR5 245 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 VASH2Q86V25 355 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 FAM58AQ8N1B3 248 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 OR4F17Q8NGA8 305 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 HS3ST6Q96QI5 342 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 V9GYV3 84 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 NCOR2Q9Y618 2525 aa9.05□□□□□ -0.96
UPF3A-212ENST00000619079 ODAMA1E959 279 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 M0QZ24 198 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 AMY1AP04745 511 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 DEFA4P12838 97 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 SELENOVP59797 346 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 RPL31P62899 125 aaKnown RBP9.04□□□□□ -0.96
UPF3A-212ENST00000619079 PSG7Q13046 419 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 CATR1Q13166 79 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 COLCA1Q6ZS62 124 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 Q6ZVH6 145 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 SCCPDHQ8NBX0 429 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 EAF1Q96JC9 268 aaPredicted RBP9.04□□□□□ -0.96
UPF3A-212ENST00000619079 RCHY1Q96PM5 261 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 DOCK11Q5JSL3 2073 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 COL27A1Q8IZC6 1860 aaPredicted RBP9.04□□□□□ -0.96
UPF3A-212ENST00000619079 TRAV24A0A0B4J272 114 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 ZG16O60844 167 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 PATE4P0C8F1 98 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 SRIP30626 198 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 EDDM3BP56851 147 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 ZNF718Q3SXZ3 478 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 PET117Q6UWS5 81 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 Q8N7P7 452 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 ZNF439Q8NDP4 499 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 OR2M7Q8NG81 312 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 TSKUQ8WUA8 353 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 CHCHD2Q9Y6H1 151 aaPredicted RBP9.04□□□□□ -0.96
UPF3A-212ENST00000619079 PTPRBP23467 1997 aa9.04□□□□□ -0.96
UPF3A-212ENST00000619079 ZNF891A8MT65 544 aaPredicted RBP9.03□□□□□ -0.96
UPF3A-212ENST00000619079 H0YJW9 148 aa9.03□□□□□ -0.96
UPF3A-212ENST00000619079 J3QR06 171 aa9.03□□□□□ -0.96
UPF3A-212ENST00000619079 RAB29O14966 203 aa9.03□□□□□ -0.96
UPF3A-212ENST00000619079 LINC00869P0C866 280 aa9.03□□□□□ -0.96
UPF3A-212ENST00000619079 DSCR4P56555 118 aaPredicted RBP9.03□□□□□ -0.96
UPF3A-212ENST00000619079 PDLIM3Q53GG5 364 aaPredicted RBP9.03□□□□□ -0.96
UPF3A-212ENST00000619079 PRR27Q6MZM9 219 aa9.03□□□□□ -0.96
UPF3A-212ENST00000619079 MRPL21Q7Z2W9 205 aaKnown RBP9.03□□□□□ -0.96
UPF3A-212ENST00000619079 CLEC7AQ9BXN2 247 aa9.03□□□□□ -0.96
UPF3A-212ENST00000619079 DEFB126Q9BYW3 111 aa9.03□□□□□ -0.96
UPF3A-212ENST00000619079 ARL2-SNX15V9GYD0 113 aa9.03□□□□□ -0.96
UPF3A-212ENST00000619079 FRYQ5TBA9 3013 aa9.03□□□□□ -0.96
UPF3A-212ENST00000619079 CDIPTO14735 213 aa9.03□□□□□ -0.96
UPF3A-212ENST00000619079 CLDN14O95500 239 aa9.03□□□□□ -0.96
UPF3A-212ENST00000619079 NTF3P20783 257 aa9.03□□□□□ -0.96
UPF3A-212ENST00000619079 G6PCP35575 357 aa9.03□□□□□ -0.96
UPF3A-212ENST00000619079 CARD18P57730 90 aa9.03□□□□□ -0.96
UPF3A-212ENST00000619079 ARG2P78540 354 aa9.03□□□□□ -0.96
UPF3A-212ENST00000619079 GCSAMLQ5JQS6 135 aa9.03□□□□□ -0.96
UPF3A-212ENST00000619079 PRAMEF20Q5VT98 475 aa9.03□□□□□ -0.96
UPF3A-212ENST00000619079 C6orf15Q6UXA7 325 aaPredicted RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms