RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 OSR1Q8TAX0 266 aaPredicted RBP9.47□□□□□ -0.89
TRIM28-212ENST00000597995 ZNF430Q9H8G1 570 aaPredicted RBP9.47□□□□□ -0.89
TRIM28-212ENST00000597995 CCL28Q9NRJ3 127 aa9.47□□□□□ -0.89
TRIM28-212ENST00000597995 COA4Q9NYJ1 87 aa9.47□□□□□ -0.89
TRIM28-212ENST00000597995 XRCC3O43542 346 aa9.46□□□□□ -0.9
TRIM28-212ENST00000597995 TMEM127O75204 238 aa9.46□□□□□ -0.9
TRIM28-212ENST00000597995 SLC22A5O76082 557 aa9.46□□□□□ -0.9
TRIM28-212ENST00000597995 OR9G9P0C7N8 305 aa9.46□□□□□ -0.9
TRIM28-212ENST00000597995 CD81P60033 236 aa9.46□□□□□ -0.9
TRIM28-212ENST00000597995 NCS1P62166 190 aa9.46□□□□□ -0.9
TRIM28-212ENST00000597995 CDK10Q15131 360 aa9.46□□□□□ -0.9
TRIM28-212ENST00000597995 TNXAQ16473 311 aa9.46□□□□□ -0.9
TRIM28-212ENST00000597995 MFSD4AQ8N468 514 aa9.46□□□□□ -0.9
TRIM28-212ENST00000597995 SRSF12Q8WXF0 261 aaKnown RBP9.46□□□□□ -0.9
TRIM28-212ENST00000597995 PHB2Q99623 299 aa9.46□□□□□ -0.9
TRIM28-212ENST00000597995 NEURL2Q9BR09 285 aa9.46□□□□□ -0.9
TRIM28-212ENST00000597995 PLEKHA3Q9HB20 300 aa9.46□□□□□ -0.9
TRIM28-212ENST00000597995 RETNQ9HD89 108 aa9.46□□□□□ -0.9
TRIM28-212ENST00000597995 DIABLOQ9NR28 239 aa9.46□□□□□ -0.9
TRIM28-212ENST00000597995 SLC2A8Q9NY64 477 aa9.46□□□□□ -0.9
TRIM28-212ENST00000597995 TAS2R8Q9NYW2 309 aa9.46□□□□□ -0.9
TRIM28-212ENST00000597995 HYDINQ4G0P3 5121 aa9.46□□□□□ -0.9
TRIM28-212ENST00000597995 A0A1B0GW64 132 aa9.45□□□□□ -0.9
TRIM28-212ENST00000597995 FAM223BA6NKX1 122 aa9.45□□□□□ -0.9
TRIM28-212ENST00000597995 ZNF785A8K8V0 405 aa9.45□□□□□ -0.9
TRIM28-212ENST00000597995 E7EUB6 86 aa9.45□□□□□ -0.9
TRIM28-212ENST00000597995 TNFSF12O43508 249 aa9.45□□□□□ -0.9
TRIM28-212ENST00000597995 PPYP01298 95 aa9.45□□□□□ -0.9
TRIM28-212ENST00000597995 ARPC4P59998 168 aa9.45□□□□□ -0.9
TRIM28-212ENST00000597995 ZNF45Q02386 682 aa9.45□□□□□ -0.9
TRIM28-212ENST00000597995 PLECQ15149 4684 aaKnown RBP9.45□□□□□ -0.9
TRIM28-212ENST00000597995 CD300EQ496F6 205 aaPredicted RBP9.45□□□□□ -0.9
TRIM28-212ENST00000597995 FAM209BQ5JX69 171 aa9.45□□□□□ -0.9
TRIM28-212ENST00000597995 CROCCP3Q8IVE0 287 aa9.45□□□□□ -0.9
TRIM28-212ENST00000597995 FAM223AQ8IWN6 122 aa9.45□□□□□ -0.9
TRIM28-212ENST00000597995 PUSL1Q8N0Z8 303 aaKnown RBP9.45□□□□□ -0.9
TRIM28-212ENST00000597995 OR13F1Q8NGS4 319 aa9.45□□□□□ -0.9
TRIM28-212ENST00000597995 SECTM1Q8WVN6 248 aa9.45□□□□□ -0.9
TRIM28-212ENST00000597995 TCTEX1D2Q8WW35 142 aa9.45□□□□□ -0.9
TRIM28-212ENST00000597995 SLC25A46Q96AG3 418 aa9.45□□□□□ -0.9
TRIM28-212ENST00000597995 HSD17B10Q99714 261 aaKnown RBP9.45□□□□□ -0.9
TRIM28-212ENST00000597995 DCUN1D5Q9BTE7 237 aa9.45□□□□□ -0.9
TRIM28-212ENST00000597995 FUNDC2Q9BWH2 189 aa9.45□□□□□ -0.9
TRIM28-212ENST00000597995 VCX3AQ9NNX9 186 aa9.45□□□□□ -0.9
TRIM28-212ENST00000597995 ANAPC10Q9UM13 185 aa9.45□□□□□ -0.9
TRIM28-212ENST00000597995 PRELID3BQ9Y3B1 194 aa9.45□□□□□ -0.9
TRIM28-212ENST00000597995 TRBV9A0A0B4J1U6 114 aa9.44□□□□□ -0.9
TRIM28-212ENST00000597995 RBMY1BA6NDE4 496 aaKnown RBP9.44□□□□□ -0.9
TRIM28-212ENST00000597995 RBMY1EA6NEQ0 496 aaKnown RBP9.44□□□□□ -0.9
TRIM28-212ENST00000597995 BMPR1BO00238 502 aa9.44□□□□□ -0.9
TRIM28-212ENST00000597995 PRH1P02810 166 aa9.44□□□□□ -0.9
TRIM28-212ENST00000597995 RBMY1DP0C7P1 496 aaKnown RBP9.44□□□□□ -0.9
TRIM28-212ENST00000597995 SMIM18P0DKX4 95 aa9.44□□□□□ -0.9
TRIM28-212ENST00000597995 TAS2R20P59543 309 aa9.44□□□□□ -0.9
TRIM28-212ENST00000597995 RHOGP84095 191 aa9.44□□□□□ -0.9
TRIM28-212ENST00000597995 ATP5G2Q06055 141 aa9.44□□□□□ -0.9
TRIM28-212ENST00000597995 DEFB114Q30KQ6 69 aa9.44□□□□□ -0.9
TRIM28-212ENST00000597995 UBE2NLQ5JXB2 153 aa9.44□□□□□ -0.9
TRIM28-212ENST00000597995 ZNF66Q6ZN08 573 aa9.44□□□□□ -0.9
TRIM28-212ENST00000597995 SAMD12Q8N8I0 201 aa9.44□□□□□ -0.9
TRIM28-212ENST00000597995 OR5AP2Q8NGF4 316 aa9.44□□□□□ -0.9
TRIM28-212ENST00000597995 GIMAP1Q8WWP7 306 aa9.44□□□□□ -0.9
TRIM28-212ENST00000597995 ACOT12Q8WYK0 555 aa9.44□□□□□ -0.9
TRIM28-212ENST00000597995 KCTD12Q96CX2 325 aaKnown RBP9.44□□□□□ -0.9
TRIM28-212ENST00000597995 S100A16Q96FQ6 103 aaKnown RBP9.44□□□□□ -0.9
TRIM28-212ENST00000597995 FAM110AQ9BQ89 295 aa9.44□□□□□ -0.9
TRIM28-212ENST00000597995 AKIP1Q9NQ31 210 aa9.44□□□□□ -0.9
TRIM28-212ENST00000597995 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.43□□□□□ -0.9
TRIM28-212ENST00000597995 HMX3A6NHT5 357 aa9.43□□□□□ -0.9
TRIM28-212ENST00000597995 TEX22C9J3V5 150 aa9.43□□□□□ -0.9
TRIM28-212ENST00000597995 KBTBD11O94819 623 aa9.43□□□□□ -0.9
TRIM28-212ENST00000597995 EIF4EP06730 217 aaKnown RBP9.43□□□□□ -0.9
TRIM28-212ENST00000597995 IL6RP08887 468 aaPredicted RBP9.43□□□□□ -0.9
TRIM28-212ENST00000597995 CD7P09564 240 aa9.43□□□□□ -0.9
TRIM28-212ENST00000597995 MYOD1P15172 320 aa9.43□□□□□ -0.9
TRIM28-212ENST00000597995 NAT1P18440 290 aa9.43□□□□□ -0.9
TRIM28-212ENST00000597995 KIR2DS2P43631 304 aa9.43□□□□□ -0.9
TRIM28-212ENST00000597995 CBX5P45973 191 aa9.43□□□□□ -0.9
TRIM28-212ENST00000597995 RFX2P48378 723 aa9.43□□□□□ -0.9
TRIM28-212ENST00000597995 FXYD4P59646 89 aa9.43□□□□□ -0.9
TRIM28-212ENST00000597995 VBP1P61758 197 aa9.43□□□□□ -0.9
TRIM28-212ENST00000597995 EXOSC2Q13868 293 aaKnown RBP9.43□□□□□ -0.9
TRIM28-212ENST00000597995 MSMO1Q15800 293 aa9.43□□□□□ -0.9
TRIM28-212ENST00000597995 C19orf35Q6ZS72 473 aa9.43□□□□□ -0.9
TRIM28-212ENST00000597995 MMD2Q8IY49 270 aa9.43□□□□□ -0.9
TRIM28-212ENST00000597995 DEFB125Q8N687 156 aa9.43□□□□□ -0.9
TRIM28-212ENST00000597995 OR4S2Q8NH73 311 aa9.43□□□□□ -0.9
TRIM28-212ENST00000597995 TMEM167AQ8TBQ9 72 aa9.43□□□□□ -0.9
TRIM28-212ENST00000597995 DYNLRB2Q8TF09 96 aa9.43□□□□□ -0.9
TRIM28-212ENST00000597995 SPIN2AQ99865 258 aa9.43□□□□□ -0.9
TRIM28-212ENST00000597995 SPIN2BQ9BPZ2 258 aa9.43□□□□□ -0.9
TRIM28-212ENST00000597995 SLC5A7Q9GZV3 580 aa9.43□□□□□ -0.9
TRIM28-212ENST00000597995 NAA50Q9GZZ1 169 aaKnown RBP9.43□□□□□ -0.9
TRIM28-212ENST00000597995 ZC4H2Q9NQZ6 224 aa9.43□□□□□ -0.9
TRIM28-212ENST00000597995 TECRQ9NZ01 308 aaKnown RBP9.43□□□□□ -0.9
TRIM28-212ENST00000597995 MRPS7Q9Y2R9 242 aaKnown RBP9.43□□□□□ -0.9
TRIM28-212ENST00000597995 CGB1A6NKQ9 187 aa9.42□□□□□ -0.9
TRIM28-212ENST00000597995 OR11H12B2RN74 326 aa9.42□□□□□ -0.9
TRIM28-212ENST00000597995 MPPED1O15442 326 aa9.42□□□□□ -0.9
TRIM28-212ENST00000597995 CREBL2O60519 120 aaPredicted RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms