RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 OR4A16Q8NH70 328 aa11.74□□□□□ -0.53
VRK3-212ENST00000596814 C22orf15Q8WYQ4 148 aa11.74□□□□□ -0.53
VRK3-212ENST00000596814 TMUB1Q9BVT8 246 aa11.74□□□□□ -0.53
VRK3-212ENST00000596814 TRAV3A0A0B4J244 114 aa11.73□□□□□ -0.53
VRK3-212ENST00000596814 MDFIC2A0A1B0GVS7 189 aa11.73□□□□□ -0.53
VRK3-212ENST00000596814 NBR2O15453 112 aa11.73□□□□□ -0.53
VRK3-212ENST00000596814 SNAPC5O75971 98 aa11.73□□□□□ -0.53
VRK3-212ENST00000596814 CD99P14209 185 aa11.73□□□□□ -0.53
VRK3-212ENST00000596814 SRP14P37108 136 aaKnown RBP11.73□□□□□ -0.53
VRK3-212ENST00000596814 S100A10P60903 97 aa11.73□□□□□ -0.53
VRK3-212ENST00000596814 RELBQ01201 579 aa11.73□□□□□ -0.53
VRK3-212ENST00000596814 PSG5Q15238 335 aa11.73□□□□□ -0.53
VRK3-212ENST00000596814 FOXRED2Q8IWF2 684 aa11.73□□□□□ -0.53
VRK3-212ENST00000596814 Q8N6K4 173 aa11.73□□□□□ -0.53
VRK3-212ENST00000596814 OR4A5Q8NH83 315 aa11.73□□□□□ -0.53
VRK3-212ENST00000596814 SSX3Q99909 188 aa11.73□□□□□ -0.53
VRK3-212ENST00000596814 SMR3AQ99954 134 aa11.73□□□□□ -0.53
VRK3-212ENST00000596814 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.73□□□□□ -0.53
VRK3-212ENST00000596814 KIAA1456Q9P272 454 aa11.73□□□□□ -0.53
VRK3-212ENST00000596814 SETXQ7Z333 2677 aaKnown RBP11.72□□□□□ -0.53
VRK3-212ENST00000596814 C15orf61A6NNL5 157 aa11.72□□□□□ -0.53
VRK3-212ENST00000596814 UPK2O00526 184 aa11.72□□□□□ -0.53
VRK3-212ENST00000596814 NXPH3O95157 252 aa11.72□□□□□ -0.53
VRK3-212ENST00000596814 IL6RP08887 468 aaPredicted RBP11.72□□□□□ -0.53
VRK3-212ENST00000596814 FOSL1P15407 271 aa11.72□□□□□ -0.53
VRK3-212ENST00000596814 NKX2-1P43699 371 aaPredicted RBP11.72□□□□□ -0.53
VRK3-212ENST00000596814 FGL1Q08830 312 aa11.72□□□□□ -0.53
VRK3-212ENST00000596814 RAB32Q13637 225 aa11.72□□□□□ -0.53
VRK3-212ENST00000596814 AANATQ16613 207 aa11.72□□□□□ -0.53
VRK3-212ENST00000596814 TEX45Q8NA69 505 aa11.72□□□□□ -0.53
VRK3-212ENST00000596814 TMEM167AQ8TBQ9 72 aa11.72□□□□□ -0.53
VRK3-212ENST00000596814 METTL1Q9UBP6 276 aaKnown RBP11.72□□□□□ -0.53
VRK3-212ENST00000596814 NAV3Q8IVL0 2385 aa11.72□□□□□ -0.53
VRK3-212ENST00000596814 G3V3Q6 166 aa11.72□□□□□ -0.53
VRK3-212ENST00000596814 RRHO14718 337 aa11.72□□□□□ -0.53
VRK3-212ENST00000596814 NDUFA3O95167 84 aa11.72□□□□□ -0.53
VRK3-212ENST00000596814 LY6G6DO95868 133 aa11.72□□□□□ -0.53
VRK3-212ENST00000596814 MBPP02686 304 aaPredicted RBP11.72□□□□□ -0.53
VRK3-212ENST00000596814 PSMB6P28072 239 aa11.72□□□□□ -0.53
VRK3-212ENST00000596814 F2RL1P55085 397 aa11.72□□□□□ -0.53
VRK3-212ENST00000596814 PLGLAQ15195 96 aa11.72□□□□□ -0.53
VRK3-212ENST00000596814 CXorf66Q5JRM2 361 aaPredicted RBP11.72□□□□□ -0.53
VRK3-212ENST00000596814 NPBQ8NG41 125 aa11.72□□□□□ -0.53
VRK3-212ENST00000596814 QTRT1Q9BXR0 403 aaKnown RBP11.72□□□□□ -0.53
VRK3-212ENST00000596814 TPSG1Q9NRR2 321 aa11.72□□□□□ -0.53
VRK3-212ENST00000596814 ZFP57Q9NU63 452 aa11.72□□□□□ -0.53
VRK3-212ENST00000596814 TMEM160Q9NX00 188 aa11.72□□□□□ -0.53
VRK3-212ENST00000596814 PRNDQ9UKY0 176 aa11.72□□□□□ -0.53
VRK3-212ENST00000596814 LSM5Q9Y4Y9 91 aaKnown RBP11.72□□□□□ -0.53
VRK3-212ENST00000596814 POMT1Q9Y6A1 747 aa11.72□□□□□ -0.53
VRK3-212ENST00000596814 SONP18583 2426 aaKnown RBP11.71□□□□□ -0.53
VRK3-212ENST00000596814 TRAV14DV4A0A0A6YYC5 116 aa11.71□□□□□ -0.54
VRK3-212ENST00000596814 FAM90A26D6RGX4 464 aa11.71□□□□□ -0.54
VRK3-212ENST00000596814 H3BUX3 64 aa11.71□□□□□ -0.54
VRK3-212ENST00000596814 ST8SIA3O43173 380 aa11.71□□□□□ -0.54
VRK3-212ENST00000596814 MPC2O95563 127 aa11.71□□□□□ -0.54
VRK3-212ENST00000596814 CRYGBP07316 175 aa11.71□□□□□ -0.54
VRK3-212ENST00000596814 PET100P0DJ07 73 aa11.71□□□□□ -0.54
VRK3-212ENST00000596814 RPL8P62917 257 aaKnown RBP11.71□□□□□ -0.54
VRK3-212ENST00000596814 ZFP69Q49AA0 526 aa11.71□□□□□ -0.54
VRK3-212ENST00000596814 AARDQ4LEZ3 155 aa11.71□□□□□ -0.54
VRK3-212ENST00000596814 Q5BKY6 102 aa11.71□□□□□ -0.54
VRK3-212ENST00000596814 ZNF429Q86V71 674 aa11.71□□□□□ -0.54
VRK3-212ENST00000596814 OR8H1Q8NGG4 311 aa11.71□□□□□ -0.54
VRK3-212ENST00000596814 PIFOQ8TCI5 191 aa11.71□□□□□ -0.54
VRK3-212ENST00000596814 FBXL15Q9H469 300 aa11.71□□□□□ -0.54
VRK3-212ENST00000596814 TMEM14BQ9NUH8 114 aa11.71□□□□□ -0.54
VRK3-212ENST00000596814 C1RLQ9NZP8 487 aa11.71□□□□□ -0.54
VRK3-212ENST00000596814 FOXA2Q9Y261 457 aaPredicted RBP11.71□□□□□ -0.54
VRK3-212ENST00000596814 SIGLEC9Q9Y336 463 aa11.71□□□□□ -0.54
VRK3-212ENST00000596814 TET2Q6N021 2002 aaPredicted RBP11.7□□□□□ -0.54
VRK3-212ENST00000596814 TNCP24821 2201 aa11.7□□□□□ -0.54
VRK3-212ENST00000596814 NCBP2LA6PVI3 153 aaKnown RBP11.7□□□□□ -0.54
VRK3-212ENST00000596814 K7EPK0 472 aa11.7□□□□□ -0.54
VRK3-212ENST00000596814 C1QBP02746 253 aa11.7□□□□□ -0.54
VRK3-212ENST00000596814 ID3Q02535 119 aa11.7□□□□□ -0.54
VRK3-212ENST00000596814 TNFRSF9Q07011 255 aa11.7□□□□□ -0.54
VRK3-212ENST00000596814 MMD2Q8IY49 270 aa11.7□□□□□ -0.54
VRK3-212ENST00000596814 FAM71E2Q8N5Q1 922 aa11.7□□□□□ -0.54
VRK3-212ENST00000596814 ZDHHC16Q969W1 377 aa11.7□□□□□ -0.54
VRK3-212ENST00000596814 PPP1R14BQ96C90 147 aa11.7□□□□□ -0.54
VRK3-212ENST00000596814 ZNF430Q9H8G1 570 aaPredicted RBP11.7□□□□□ -0.54
VRK3-212ENST00000596814 HSPB7Q9UBY9 170 aa11.7□□□□□ -0.54
VRK3-212ENST00000596814 TCF19Q9Y242 345 aa11.7□□□□□ -0.54
VRK3-212ENST00000596814 WRBO00258 174 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 FGF2P09038 288 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 POLR2GP62487 172 aaKnown RBP eCLIP11.69□□□□□ -0.54
VRK3-212ENST00000596814 PRSS8Q16651 343 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 C5orf64Q2M2E5 130 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 C11orf87Q6NUJ2 197 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 CLEC9AQ6UXN8 241 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 PPP1R27Q86WC6 154 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 THAP6Q8TBB0 222 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 ZNF48Q96MX3 618 aaPredicted RBP11.69□□□□□ -0.54
VRK3-212ENST00000596814 SLC25A33Q9BSK2 321 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 MAGT1Q9H0U3 335 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 PLSCR3Q9NRY6 295 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 FKBP11Q9NYL4 201 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 CACFD1Q9UGQ2 172 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 RCL1Q9Y2P8 373 aaKnown RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms