RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 CRYGBP07316 175 aa12.25□□□□□ -0.45
SS18-215ENST00000580642 SNRNP70P08621 437 aaKnown RBP12.25□□□□□ -0.45
SS18-215ENST00000580642 SAA1P0DJI8 122 aaPredicted RBP12.25□□□□□ -0.45
SS18-215ENST00000580642 PVALBP20472 110 aaPredicted RBP12.25□□□□□ -0.45
SS18-215ENST00000580642 RELBQ01201 579 aa12.25□□□□□ -0.45
SS18-215ENST00000580642 PSG5Q15238 335 aa12.25□□□□□ -0.45
SS18-215ENST00000580642 LRRC75BQ2VPJ9 315 aa12.25□□□□□ -0.45
SS18-215ENST00000580642 RUSC1-AS1Q66K80 236 aa12.25□□□□□ -0.45
SS18-215ENST00000580642 C11orf87Q6NUJ2 197 aa12.25□□□□□ -0.45
SS18-215ENST00000580642 PRSS54Q6PEW0 395 aa12.25□□□□□ -0.45
SS18-215ENST00000580642 BRD3OSQ6XYD6 125 aa12.25□□□□□ -0.45
SS18-215ENST00000580642 MMD2Q8IY49 270 aa12.25□□□□□ -0.45
SS18-215ENST00000580642 OR5B3Q8NH48 314 aa12.25□□□□□ -0.45
SS18-215ENST00000580642 C17orf50Q8WW18 174 aa12.25□□□□□ -0.45
SS18-215ENST00000580642 RAB40CQ96S21 281 aa12.25□□□□□ -0.45
SS18-215ENST00000580642 TMEM14BQ9NUH8 114 aa12.25□□□□□ -0.45
SS18-215ENST00000580642 KIAA1456Q9P272 454 aa12.25□□□□□ -0.45
SS18-215ENST00000580642 PITPNC1Q9UKF7 332 aa12.25□□□□□ -0.45
SS18-215ENST00000580642 RRHO14718 337 aa12.24□□□□□ -0.45
SS18-215ENST00000580642 NBR2O15453 112 aa12.24□□□□□ -0.45
SS18-215ENST00000580642 MBPP02686 304 aaPredicted RBP12.24□□□□□ -0.45
SS18-215ENST00000580642 HNRNPCP07910 306 aaKnown RBP eCLIP12.24□□□□□ -0.45
SS18-215ENST00000580642 TAS2R30P59541 319 aa12.24□□□□□ -0.45
SS18-215ENST00000580642 SPCS3P61009 180 aa12.24□□□□□ -0.45
SS18-215ENST00000580642 C16orf82Q7Z2V1 217 aa12.24□□□□□ -0.45
SS18-215ENST00000580642 CIB3Q96Q77 187 aaPredicted RBP12.24□□□□□ -0.45
SS18-215ENST00000580642 SIGLEC9Q9Y336 463 aa12.24□□□□□ -0.45
SS18-215ENST00000580642 E5RGE8 158 aa12.23□□□□□ -0.45
SS18-215ENST00000580642 INS-IGF2F8WCM5 200 aa12.23□□□□□ -0.45
SS18-215ENST00000580642 G3V3Q6 166 aa12.23□□□□□ -0.45
SS18-215ENST00000580642 K7EPK0 472 aa12.23□□□□□ -0.45
SS18-215ENST00000580642 GPR137BO60478 399 aa12.23□□□□□ -0.45
SS18-215ENST00000580642 RBMXL2O75526 392 aaKnown RBP12.23□□□□□ -0.45
SS18-215ENST00000580642 DEDDO75618 318 aa12.23□□□□□ -0.45
SS18-215ENST00000580642 OR9G9P0C7N8 305 aa12.23□□□□□ -0.45
SS18-215ENST00000580642 TMEM11P17152 192 aa12.23□□□□□ -0.45
SS18-215ENST00000580642 HSPE1P61604 102 aaKnown RBP12.23□□□□□ -0.45
SS18-215ENST00000580642 RPL8P62917 257 aaKnown RBP12.23□□□□□ -0.45
SS18-215ENST00000580642 TNFRSF9Q07011 255 aa12.23□□□□□ -0.45
SS18-215ENST00000580642 RAB32Q13637 225 aa12.23□□□□□ -0.45
SS18-215ENST00000580642 HES1Q14469 280 aa12.23□□□□□ -0.45
SS18-215ENST00000580642 TUSC1Q2TAM9 212 aa12.23□□□□□ -0.45
SS18-215ENST00000580642 CXorf66Q5JRM2 361 aaPredicted RBP12.23□□□□□ -0.45
SS18-215ENST00000580642 SSX9Q7RTT3 188 aa12.23□□□□□ -0.45
SS18-215ENST00000580642 NOXA1Q86UR1 476 aa12.23□□□□□ -0.45
SS18-215ENST00000580642 PPP1R27Q86WC6 154 aa12.23□□□□□ -0.45
SS18-215ENST00000580642 VKORC1L1Q8N0U8 176 aa12.23□□□□□ -0.45
SS18-215ENST00000580642 FAM71E2Q8N5Q1 922 aa12.23□□□□□ -0.45
SS18-215ENST00000580642 OR5R1Q8NH85 324 aa12.23□□□□□ -0.45
SS18-215ENST00000580642 TMUB1Q9BVT8 246 aa12.23□□□□□ -0.45
SS18-215ENST00000580642 NSG2Q9Y328 171 aa12.23□□□□□ -0.45
SS18-215ENST00000580642 ABCA1O95477 2261 aa12.23□□□□□ -0.45
SS18-215ENST00000580642 VPS13CQ709C8 3753 aa12.23□□□□□ -0.45
SS18-215ENST00000580642 IGHV3OR16-10A0A075B7F0 116 aa12.22□□□□□ -0.45
SS18-215ENST00000580642 M0QZK8 103 aa12.22□□□□□ -0.45
SS18-215ENST00000580642 WRBO00258 174 aa12.22□□□□□ -0.45
SS18-215ENST00000580642 FGF16O43320 207 aa12.22□□□□□ -0.45
SS18-215ENST00000580642 SYNGR2O43760 224 aa12.22□□□□□ -0.45
SS18-215ENST00000580642 SLC25A17O43808 307 aa12.22□□□□□ -0.45
SS18-215ENST00000580642 SCAF4O95104 1147 aaKnown RBP12.22□□□□□ -0.45
SS18-215ENST00000580642 ATP5IP56385 69 aaPredicted RBP12.22□□□□□ -0.45
SS18-215ENST00000580642 MMDQ15546 238 aa12.22□□□□□ -0.45
SS18-215ENST00000580642 PRSS8Q16651 343 aa12.22□□□□□ -0.45
SS18-215ENST00000580642 FAM120AOSQ5T036 256 aa12.22□□□□□ -0.45
SS18-215ENST00000580642 MRPL41Q8IXM3 137 aaKnown RBP12.22□□□□□ -0.45
SS18-215ENST00000580642 WDR89Q96FK6 387 aaPredicted RBP12.22□□□□□ -0.45
SS18-215ENST00000580642 SSX3Q99909 188 aa12.22□□□□□ -0.45
SS18-215ENST00000580642 SRSF8Q9BRL6 282 aaKnown RBP12.22□□□□□ -0.45
SS18-215ENST00000580642 COMMD5Q9GZQ3 224 aa12.22□□□□□ -0.45
SS18-215ENST00000580642 PLSCR3Q9NRY6 295 aa12.22□□□□□ -0.45
SS18-215ENST00000580642 METTL1Q9UBP6 276 aaKnown RBP12.22□□□□□ -0.45
SS18-215ENST00000580642 WSB1Q9Y6I7 421 aa12.22□□□□□ -0.45
SS18-215ENST00000580642 MAP1AP78559 2803 aaPredicted RBP12.22□□□□□ -0.45
SS18-215ENST00000580642 TRAV14DV4A0A0A6YYC5 116 aa12.21□□□□□ -0.45
SS18-215ENST00000580642 ACTL6BO94805 426 aa12.21□□□□□ -0.45
SS18-215ENST00000580642 OR2F2O95006 317 aa12.21□□□□□ -0.45
SS18-215ENST00000580642 P2RY1P47900 373 aa12.21□□□□□ -0.45
SS18-215ENST00000580642 S100A10P60903 97 aa12.21□□□□□ -0.45
SS18-215ENST00000580642 CD300CQ08708 224 aa12.21□□□□□ -0.45
SS18-215ENST00000580642 C5orf64Q2M2E5 130 aa12.21□□□□□ -0.45
SS18-215ENST00000580642 HSD17B13Q7Z5P4 300 aaPredicted RBP12.21□□□□□ -0.45
SS18-215ENST00000580642 OR1L8Q8NGR8 309 aa12.21□□□□□ -0.45
SS18-215ENST00000580642 PIFOQ8TCI5 191 aa12.21□□□□□ -0.45
SS18-215ENST00000580642 RITA1Q96K30 269 aa12.21□□□□□ -0.45
SS18-215ENST00000580642 SMIM8Q96KF7 97 aa12.21□□□□□ -0.45
SS18-215ENST00000580642 RBM14Q96PK6 669 aaKnown RBP12.21□□□□□ -0.45
SS18-215ENST00000580642 CLCC1Q96S66 551 aa12.21□□□□□ -0.45
SS18-215ENST00000580642 RNF126Q9BV68 326 aa12.21□□□□□ -0.45
SS18-215ENST00000580642 YAE1D1Q9NRH1 226 aa12.21□□□□□ -0.45
SS18-215ENST00000580642 TCF19Q9Y242 345 aa12.21□□□□□ -0.45
SS18-215ENST00000580642 OR51B2Q9Y5P1 312 aa12.21□□□□□ -0.45
SS18-215ENST00000580642 FLNBO75369 2602 aaKnown RBP12.21□□□□□ -0.46
SS18-215ENST00000580642 CSMD1Q96PZ7 3565 aa12.2□□□□□ -0.46
SS18-215ENST00000580642 TSC22D2O75157 780 aa12.2□□□□□ -0.46
SS18-215ENST00000580642 SCGB1D2O95969 90 aa12.2□□□□□ -0.46
SS18-215ENST00000580642 IFNA17P01571 189 aa12.2□□□□□ -0.46
SS18-215ENST00000580642 CD99P14209 185 aa12.2□□□□□ -0.46
SS18-215ENST00000580642 C4BPBP20851 252 aa12.2□□□□□ -0.46
SS18-215ENST00000580642 NUP62P37198 522 aaPredicted RBP12.2□□□□□ -0.46
SS18-215ENST00000580642 PRCDQ00LT1 54 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms