RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 DEFA5Q01523 94 aa18.43■□□□□ 0.54
SHMT1-206ENST00000579558 AADACL3Q5VUY0 350 aa18.43■□□□□ 0.54
SHMT1-206ENST00000579558 LYSMD2Q8IV50 215 aa18.43■□□□□ 0.54
SHMT1-206ENST00000579558 ADAD2Q8NCV1 583 aaKnown RBP18.43■□□□□ 0.54
SHMT1-206ENST00000579558 OR51H1Q8NH63 302 aa18.43■□□□□ 0.54
SHMT1-206ENST00000579558 RBFOX2O43251 390 aaKnown RBP eCLIP18.42■□□□□ 0.54
SHMT1-206ENST00000579558 OR6F1Q8NGZ6 308 aa18.42■□□□□ 0.54
SHMT1-206ENST00000579558 AIFM2Q9BRQ8 373 aa18.42■□□□□ 0.54
SHMT1-206ENST00000579558 ADAM30Q9UKF2 790 aa18.42■□□□□ 0.54
SHMT1-206ENST00000579558 RCVRNP35243 200 aa18.41■□□□□ 0.54
SHMT1-206ENST00000579558 ECI1P42126 302 aa18.41■□□□□ 0.54
SHMT1-206ENST00000579558 INSL3P51460 131 aa18.41■□□□□ 0.54
SHMT1-206ENST00000579558 FXYD6Q9H0Q3 95 aa18.41■□□□□ 0.54
SHMT1-206ENST00000579558 ANKRD34BA5PLL1 514 aa18.4■□□□□ 0.54
SHMT1-206ENST00000579558 HPRT1P00492 218 aa18.4■□□□□ 0.54
SHMT1-206ENST00000579558 MAS1LP35410 378 aa18.4■□□□□ 0.54
SHMT1-206ENST00000579558 RPL27AP46776 148 aaKnown RBP18.4■□□□□ 0.54
SHMT1-206ENST00000579558 CLVS1Q8IUQ0 354 aaPredicted RBP18.4■□□□□ 0.54
SHMT1-206ENST00000579558 CD300LFQ8TDQ1 290 aa18.4■□□□□ 0.54
SHMT1-206ENST00000579558 USMG5Q96IX5 58 aa18.4■□□□□ 0.54
SHMT1-206ENST00000579558 RANGRFQ9HD47 186 aaPredicted RBP18.4■□□□□ 0.54
SHMT1-206ENST00000579558 EXTL2Q9UBQ6 330 aa18.4■□□□□ 0.54
SHMT1-206ENST00000579558 HMX3A6NHT5 357 aa18.39■□□□□ 0.53
SHMT1-206ENST00000579558 SAP30O75446 220 aa18.39■□□□□ 0.53
SHMT1-206ENST00000579558 RLN1P04808 185 aa18.39■□□□□ 0.53
SHMT1-206ENST00000579558 TAS2R31P59538 309 aa18.39■□□□□ 0.53
SHMT1-206ENST00000579558 TSPAN5P62079 268 aa18.39■□□□□ 0.53
SHMT1-206ENST00000579558 SPCS2Q15005 226 aa18.39■□□□□ 0.53
SHMT1-206ENST00000579558 RNASE12Q5GAN4 147 aaKnown RBP18.39■□□□□ 0.53
SHMT1-206ENST00000579558 OR4A47Q6IF82 309 aa18.39■□□□□ 0.53
SHMT1-206ENST00000579558 ZNF429Q86V71 674 aa18.39■□□□□ 0.53
SHMT1-206ENST00000579558 SLC25A42Q86VD7 318 aa18.39■□□□□ 0.53
SHMT1-206ENST00000579558 TTC9CQ8N5M4 171 aa18.39■□□□□ 0.53
SHMT1-206ENST00000579558 OR4A5Q8NH83 315 aa18.39■□□□□ 0.53
SHMT1-206ENST00000579558 FYTTD1Q96QD9 318 aaKnown RBP18.39■□□□□ 0.53
SHMT1-206ENST00000579558 HRASLSQ9HDD0 168 aa18.39■□□□□ 0.53
SHMT1-206ENST00000579558 BET1LQ9NYM9 111 aa18.39■□□□□ 0.53
SHMT1-206ENST00000579558 TEX22C9J3V5 150 aa18.38■□□□□ 0.53
SHMT1-206ENST00000579558 PGLYRP1O75594 196 aaPredicted RBP18.38■□□□□ 0.53
SHMT1-206ENST00000579558 PRH1P02810 166 aa18.38■□□□□ 0.53
SHMT1-206ENST00000579558 NQO2P16083 231 aa18.38■□□□□ 0.53
SHMT1-206ENST00000579558 ZP3P21754 424 aa18.38■□□□□ 0.53
SHMT1-206ENST00000579558 RPL8P62917 257 aaKnown RBP18.38■□□□□ 0.53
SHMT1-206ENST00000579558 CMTM1Q8IZ96 169 aa18.38■□□□□ 0.53
SHMT1-206ENST00000579558 PRR25Q96S07 402 aa18.38■□□□□ 0.53
SHMT1-206ENST00000579558 GPR31O00270 319 aa18.37■□□□□ 0.53
SHMT1-206ENST00000579558 RBMXL2O75526 392 aaKnown RBP18.37■□□□□ 0.53
SHMT1-206ENST00000579558 S1PR2O95136 353 aa18.37■□□□□ 0.53
SHMT1-206ENST00000579558 IL6RP08887 468 aaPredicted RBP18.37■□□□□ 0.53
SHMT1-206ENST00000579558 HLA-GP17693 338 aa18.37■□□□□ 0.53
SHMT1-206ENST00000579558 RHOGP84095 191 aa18.37■□□□□ 0.53
SHMT1-206ENST00000579558 DCTN2Q13561 401 aaKnown RBP18.37■□□□□ 0.53
SHMT1-206ENST00000579558 ZNF343Q6P1L6 599 aa18.37■□□□□ 0.53
SHMT1-206ENST00000579558 ACSM6Q6P461 480 aa18.37■□□□□ 0.53
SHMT1-206ENST00000579558 PLEKHA2Q9HB19 425 aa18.37■□□□□ 0.53
SHMT1-206ENST00000579558 AKIP1Q9NQ31 210 aa18.37■□□□□ 0.53
SHMT1-206ENST00000579558 DPPA5A6NC42 116 aa18.36■□□□□ 0.53
SHMT1-206ENST00000579558 FAM223BA6NKX1 122 aa18.36■□□□□ 0.53
SHMT1-206ENST00000579558 E7EUB6 86 aa18.36■□□□□ 0.53
SHMT1-206ENST00000579558 ZNF735P0CB33 412 aa18.36■□□□□ 0.53
SHMT1-206ENST00000579558 ZNF45Q02386 682 aa18.36■□□□□ 0.53
SHMT1-206ENST00000579558 POU2AF1Q16633 256 aa18.36■□□□□ 0.53
SHMT1-206ENST00000579558 FAM223AQ8IWN6 122 aa18.36■□□□□ 0.53
SHMT1-206ENST00000579558 DMBX1Q8NFW5 382 aa18.36■□□□□ 0.53
SHMT1-206ENST00000579558 RAB2BQ8WUD1 216 aa18.36■□□□□ 0.53
SHMT1-206ENST00000579558 COMMD9Q9P000 198 aa18.36■□□□□ 0.53
SHMT1-206ENST00000579558 PEF1Q9UBV8 284 aaKnown RBP18.36■□□□□ 0.53
SHMT1-206ENST00000579558 ZNF256Q9Y2P7 627 aaPredicted RBP18.36■□□□□ 0.53
SHMT1-206ENST00000579558 ZNF257Q9Y2Q1 563 aa18.36■□□□□ 0.53
SHMT1-206ENST00000579558 TRBV9A0A0B4J1U6 114 aa18.35■□□□□ 0.53
SHMT1-206ENST00000579558 RGS5O15539 181 aa18.35■□□□□ 0.53
SHMT1-206ENST00000579558 MYOD1P15172 320 aa18.35■□□□□ 0.53
SHMT1-206ENST00000579558 F2RP25116 425 aa18.35■□□□□ 0.53
SHMT1-206ENST00000579558 OR52I2Q8NH67 350 aa18.35■□□□□ 0.53
SHMT1-206ENST00000579558 SLC2A9Q9NRM0 540 aa18.35■□□□□ 0.53
SHMT1-206ENST00000579558 TMEM140Q9NV12 185 aa18.35■□□□□ 0.53
SHMT1-206ENST00000579558 A0A1B0GW64 132 aa18.34■□□□□ 0.53
SHMT1-206ENST00000579558 NPIPB5A8MRT5 1133 aa18.34■□□□□ 0.53
SHMT1-206ENST00000579558 M0QYG6 137 aa18.34■□□□□ 0.53
SHMT1-206ENST00000579558 TPPPO94811 219 aa18.34■□□□□ 0.53
SHMT1-206ENST00000579558 LY86O95711 162 aa18.34■□□□□ 0.53
SHMT1-206ENST00000579558 TRBV12-3P01733 135 aa18.34■□□□□ 0.53
SHMT1-206ENST00000579558 TMBIM6P55061 237 aa18.34■□□□□ 0.53
SHMT1-206ENST00000579558 ERVK-16P61578 105 aa18.34■□□□□ 0.53
SHMT1-206ENST00000579558 ATP5G2Q06055 141 aa18.34■□□□□ 0.53
SHMT1-206ENST00000579558 EXOSC2Q13868 293 aaKnown RBP18.34■□□□□ 0.53
SHMT1-206ENST00000579558 PHLDA2Q53GA4 152 aa18.34■□□□□ 0.53
SHMT1-206ENST00000579558 VAX1Q5SQQ9 334 aa18.34■□□□□ 0.53
SHMT1-206ENST00000579558 LPCAT3Q6P1A2 487 aa18.34■□□□□ 0.53
SHMT1-206ENST00000579558 C15orf40Q8WUR7 153 aa18.34■□□□□ 0.53
SHMT1-206ENST00000579558 DGCR14Q96DF8 476 aaKnown RBP18.34■□□□□ 0.53
SHMT1-206ENST00000579558 OR4C12Q96R67 309 aa18.34■□□□□ 0.53
SHMT1-206ENST00000579558 BCL7BQ9BQE9 202 aa18.34■□□□□ 0.53
SHMT1-206ENST00000579558 ELOVL1Q9BW60 279 aa18.34■□□□□ 0.53
SHMT1-206ENST00000579558 MIXL1Q9H2W2 232 aa18.34■□□□□ 0.53
SHMT1-206ENST00000579558 KLK11Q9UBX7 282 aa18.34■□□□□ 0.53
SHMT1-206ENST00000579558 TRAV3A0A0B4J244 114 aa18.33■□□□□ 0.52
SHMT1-206ENST00000579558 UPK2O00526 184 aa18.33■□□□□ 0.52
SHMT1-206ENST00000579558 AREGP15514 252 aa18.33■□□□□ 0.52
SHMT1-206ENST00000579558 RPA2P15927 270 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms