RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 CRLF1O75462 422 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 RP2O75695 350 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 MELTFP08582 738 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 OR9G9P0C7N8 305 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 SLC2A1P11166 492 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 MDH2P40926 338 aaKnown RBP4.8□□□□□ -1.64
VPS53-212ENST00000572259 DVL1P1P54792 670 aaPredicted RBP4.8□□□□□ -1.64
VPS53-212ENST00000572259 ZNF121P58317 390 aaPredicted RBP4.8□□□□□ -1.64
VPS53-212ENST00000572259 FAM3AP98173 230 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 ZNF92Q03936 586 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 KIAA0141Q14154 515 aaPredicted RBP4.8□□□□□ -1.64
VPS53-212ENST00000572259 ARL6IP1Q15041 203 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 TRAM1Q15629 374 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 ZNF181Q2M3W8 571 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 TMEM155Q4W5P6 130 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 GLYATL3Q5SZD4 288 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 C12orf73Q69YU5 71 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 RBMS3Q6XE24 437 aaKnown RBP4.8□□□□□ -1.64
VPS53-212ENST00000572259 TMED4Q7Z7H5 227 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 SLC51BQ86UW2 128 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 PUSL1Q8N0Z8 303 aaKnown RBP4.8□□□□□ -1.64
VPS53-212ENST00000572259 ZNF555Q8NEP9 628 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 PXT1Q8NFP0 134 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 OR2T27Q8NH04 317 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 OR8S1Q8NH09 359 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 OR56B4Q8NH76 319 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 CLDND2Q8NHS1 167 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 RFESDQ8TAC1 157 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 EEF1AKMT3Q96AZ1 226 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 ZNF488Q96MN9 340 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 RDH12Q96NR8 316 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 PDCD1LG2Q9BQ51 273 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 OR51J1Q9H342 316 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.8□□□□□ -1.64
VPS53-212ENST00000572259 TREM2Q9NZC2 230 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 DNAJC27Q9NZQ0 273 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 RAB26Q9ULW5 256 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 MPC1Q9Y5U8 109 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 IGKV2D-30A0A075B6S6 120 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 SAA2-SAA4A0A096LPE2 208 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 TRAV38-1A0A0B4J264 116 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 A6NDN8 102 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 F5H5P2 479 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 K7EMT4 169 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 FABP7O15540 132 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 NDUFA2O43678 99 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 FOXH1O75593 365 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 SULT1C4O75897 302 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 FSTL3O95633 263 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 HLA-DPB1P04440 258 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 ARG1P05089 322 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 MSMBP08118 114 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 MRPL3P09001 348 aaKnown RBP4.79□□□□□ -1.64
VPS53-212ENST00000572259 PSMA1P25786 263 aaKnown RBP4.79□□□□□ -1.64
VPS53-212ENST00000572259 HRH1P35367 487 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 SRP14P37108 136 aaKnown RBP4.79□□□□□ -1.64
VPS53-212ENST00000572259 CD200P41217 278 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 SNRPGP62308 76 aaKnown RBP4.79□□□□□ -1.64
VPS53-212ENST00000572259 RANP62826 216 aaKnown RBP4.79□□□□□ -1.64
VPS53-212ENST00000572259 IL5RAQ01344 420 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 IZUMO4Q1ZYL8 232 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 KRTAP21-3Q3LHN1 58 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 SLC25A30Q5SVS4 291 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 AVPI1Q5T686 147 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 ZNF322Q6U7Q0 402 aaPredicted RBP4.79□□□□□ -1.64
VPS53-212ENST00000572259 FAM131AQ6UXB0 335 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 Q6ZR03 302 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 FAM220AQ7Z4H9 259 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 LRRC28Q86X40 367 aaPredicted RBP4.79□□□□□ -1.64
VPS53-212ENST00000572259 CBR4Q8N4T8 237 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 YIPF7Q8N8F6 280 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 SAMD12Q8N8I0 201 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 OR10AD1Q8NGE0 317 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 OR10G8Q8NGN5 311 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 FAM218AQ96MZ4 157 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 SDHCQ99643 169 aaPredicted RBP4.79□□□□□ -1.64
VPS53-212ENST00000572259 ADAT1Q9BUB4 502 aaKnown RBP4.79□□□□□ -1.64
VPS53-212ENST00000572259 CDCA4Q9BXL8 241 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 WDR13Q9H1Z4 485 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 VCXQ9H320 206 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 MOB1AQ9H8S9 216 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 KLF12Q9Y4X4 402 aa4.79□□□□□ -1.64
VPS53-212ENST00000572259 ATRQ13535 2644 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 A0A0G2JMP0 313 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 A0A0X1KG70 313 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 ZNF816-ZNF321PA0A0X1KG74 233 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 LOC100130705A0A1B0GUX0 176 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 A0A1B0GWB2 263 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 IRGMA1A4Y4 181 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 METTL15A6NJ78 407 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 EIF3GO75821 320 aaKnown RBP eCLIP4.78□□□□□ -1.64
VPS53-212ENST00000572259 LALBAP00709 142 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 OR5AL1P0C617 328 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 SSTR5P35346 364 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 POLR2IP36954 125 aaKnown RBP4.78□□□□□ -1.64
VPS53-212ENST00000572259 KIR2DS4P43632 304 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 GPM6AP51674 278 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 MFAP2P55001 183 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 CLDN12P56749 244 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 LMO4P61968 165 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms