RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 TMEM41BQ5BJD5 291 aa12.98□□□□□ -0.33
CLK3-227ENST00000570296 ZNF502Q8TBZ5 544 aa12.98□□□□□ -0.33
CLK3-227ENST00000570296 ADTRPQ96IZ2 230 aa12.98□□□□□ -0.33
CLK3-227ENST00000570296 SCRT1Q9BWW7 348 aa12.98□□□□□ -0.33
CLK3-227ENST00000570296 GHRLQ9UBU3 117 aa12.98□□□□□ -0.33
CLK3-227ENST00000570296 HMCN2Q8NDA2 5059 aa12.97□□□□□ -0.33
CLK3-227ENST00000570296 IGLV11-55A0A075B6I3 123 aa12.97□□□□□ -0.33
CLK3-227ENST00000570296 TRBV5-5A0A0J9YX44 114 aa12.97□□□□□ -0.33
CLK3-227ENST00000570296 IL6RP08887 468 aaPredicted RBP12.97□□□□□ -0.33
CLK3-227ENST00000570296 FAM210BQ96KR6 192 aa12.97□□□□□ -0.33
CLK3-227ENST00000570296 C18orf15Q96N68 181 aa12.97□□□□□ -0.33
CLK3-227ENST00000570296 CELA1Q9UNI1 258 aa12.97□□□□□ -0.33
CLK3-227ENST00000570296 ETV7Q9Y603 341 aa12.97□□□□□ -0.33
CLK3-227ENST00000570296 X6R8D5 127 aa12.97□□□□□ -0.33
CLK3-227ENST00000570296 IGKV1-6A0A0C4DH72 117 aa12.96□□□□□ -0.33
CLK3-227ENST00000570296 RPA2P15927 270 aa12.96□□□□□ -0.33
CLK3-227ENST00000570296 XAF1Q6GPH4 301 aa12.96□□□□□ -0.33
CLK3-227ENST00000570296 ZNF767PQ75MW2 155 aa12.96□□□□□ -0.33
CLK3-227ENST00000570296 SSX9Q7RTT3 188 aa12.96□□□□□ -0.33
CLK3-227ENST00000570296 SPATA12Q7Z6I5 190 aa12.96□□□□□ -0.33
CLK3-227ENST00000570296 PQLC1Q8N2U9 271 aa12.96□□□□□ -0.33
CLK3-227ENST00000570296 C5orf30Q96GV9 206 aa12.96□□□□□ -0.33
CLK3-227ENST00000570296 UQCC2Q9BRT2 126 aa12.96□□□□□ -0.33
CLK3-227ENST00000570296 SAC3D1A6NKF1 404 aa12.95□□□□□ -0.34
CLK3-227ENST00000570296 K7EMT4 169 aa12.95□□□□□ -0.34
CLK3-227ENST00000570296 TGOLN2O43493 480 aa12.95□□□□□ -0.34
CLK3-227ENST00000570296 ZNF735P0CB33 412 aa12.95□□□□□ -0.34
CLK3-227ENST00000570296 AREGP15514 252 aa12.95□□□□□ -0.34
CLK3-227ENST00000570296 NPY1RP25929 384 aa12.95□□□□□ -0.34
CLK3-227ENST00000570296 RPL27AP46776 148 aaKnown RBP12.95□□□□□ -0.34
CLK3-227ENST00000570296 SERPINB10P48595 397 aa12.95□□□□□ -0.34
CLK3-227ENST00000570296 Q499Y3 187 aa12.95□□□□□ -0.34
CLK3-227ENST00000570296 OR2A7Q96R45 310 aa12.95□□□□□ -0.34
CLK3-227ENST00000570296 Q9N2K0 584 aa12.95□□□□□ -0.34
CLK3-227ENST00000570296 OAZ3Q9UMX2 235 aa12.95□□□□□ -0.34
CLK3-227ENST00000570296 NDUFA4O00483 81 aa12.94□□□□□ -0.34
CLK3-227ENST00000570296 DEFA4P12838 97 aa12.94□□□□□ -0.34
CLK3-227ENST00000570296 TFPI2P48307 235 aa12.94□□□□□ -0.34
CLK3-227ENST00000570296 RPS27AP62979 156 aaKnown RBP12.94□□□□□ -0.34
CLK3-227ENST00000570296 RCN1Q15293 331 aa12.94□□□□□ -0.34
CLK3-227ENST00000570296 MORN3Q6PF18 240 aaPredicted RBP12.94□□□□□ -0.34
CLK3-227ENST00000570296 C6orf223Q8N319 242 aa12.94□□□□□ -0.34
CLK3-227ENST00000570296 SMIM19Q96E16 107 aa12.94□□□□□ -0.34
CLK3-227ENST00000570296 RNF2Q99496 336 aa12.94□□□□□ -0.34
CLK3-227ENST00000570296 C9orf16Q9BUW7 83 aa12.94□□□□□ -0.34
CLK3-227ENST00000570296 RNF167Q9H6Y7 350 aa12.94□□□□□ -0.34
CLK3-227ENST00000570296 PLEKHJ1Q9NW61 149 aa12.94□□□□□ -0.34
CLK3-227ENST00000570296 ORC6Q9Y5N6 252 aa12.94□□□□□ -0.34
CLK3-227ENST00000570296 A0A1B0GW64 132 aa12.93□□□□□ -0.34
CLK3-227ENST00000570296 E7EUB6 86 aa12.93□□□□□ -0.34
CLK3-227ENST00000570296 GIG44P09565 113 aaPredicted RBP12.93□□□□□ -0.34
CLK3-227ENST00000570296 UBBP0CG47 229 aa12.93□□□□□ -0.34
CLK3-227ENST00000570296 PTBP1P26599 531 aaKnown RBP eCLIP12.93□□□□□ -0.34
CLK3-227ENST00000570296 HTR2CP28335 458 aa12.93□□□□□ -0.34
CLK3-227ENST00000570296 DUTP33316 252 aaKnown RBP12.93□□□□□ -0.34
CLK3-227ENST00000570296 FAM3BP58499 235 aaPredicted RBP12.93□□□□□ -0.34
CLK3-227ENST00000570296 NKAIN3Q8N8D7 197 aa12.93□□□□□ -0.34
CLK3-227ENST00000570296 HDHD3Q9BSH5 251 aaPredicted RBP12.93□□□□□ -0.34
CLK3-227ENST00000570296 TMEM59Q9BXS4 323 aa12.93□□□□□ -0.34
CLK3-227ENST00000570296 OR51E2Q9H255 320 aa12.93□□□□□ -0.34
CLK3-227ENST00000570296 SMPD3Q9NY59 655 aaPredicted RBP12.93□□□□□ -0.34
CLK3-227ENST00000570296 TRBV5-7A0A0A0MS05 114 aa12.92□□□□□ -0.34
CLK3-227ENST00000570296 SRMP19623 302 aa12.92□□□□□ -0.34
CLK3-227ENST00000570296 MAS1LP35410 378 aa12.92□□□□□ -0.34
CLK3-227ENST00000570296 OR2G6Q5TZ20 316 aa12.92□□□□□ -0.34
CLK3-227ENST00000570296 NICN1Q9BSH3 213 aa12.92□□□□□ -0.34
CLK3-227ENST00000570296 C20orf24Q9BUV8 137 aa12.92□□□□□ -0.34
CLK3-227ENST00000570296 TM2D1Q9BX74 207 aa12.92□□□□□ -0.34
CLK3-227ENST00000570296 C12orf4Q9NQ89 552 aa12.92□□□□□ -0.34
CLK3-227ENST00000570296 SMPXQ9UHP9 88 aa12.92□□□□□ -0.34
CLK3-227ENST00000570296 AK3Q9UIJ7 227 aa12.92□□□□□ -0.34
CLK3-227ENST00000570296 LINC00473A8K010 186 aa12.91□□□□□ -0.34
CLK3-227ENST00000570296 C15orf62A8K5M9 175 aa12.91□□□□□ -0.34
CLK3-227ENST00000570296 OGG1O15527 345 aa12.91□□□□□ -0.34
CLK3-227ENST00000570296 DFFBO76075 338 aa12.91□□□□□ -0.34
CLK3-227ENST00000570296 LIMS3P0CW19 117 aa12.91□□□□□ -0.34
CLK3-227ENST00000570296 LIMS4P0CW20 117 aa12.91□□□□□ -0.34
CLK3-227ENST00000570296 PSMD7P51665 324 aa12.91□□□□□ -0.34
CLK3-227ENST00000570296 YIF1BQ5BJH7 314 aa12.91□□□□□ -0.34
CLK3-227ENST00000570296 VSTM2AQ8TAG5 236 aa12.91□□□□□ -0.34
CLK3-227ENST00000570296 SLC29A1Q99808 456 aa12.91□□□□□ -0.34
CLK3-227ENST00000570296 TBC1D24Q9ULP9 559 aa12.91□□□□□ -0.34
CLK3-227ENST00000570296 TRDCB7Z8K6 153 aa12.9□□□□□ -0.34
CLK3-227ENST00000570296 KBTBD11O94819 623 aa12.9□□□□□ -0.34
CLK3-227ENST00000570296 SPP1P10451 314 aa12.9□□□□□ -0.34
CLK3-227ENST00000570296 RPS11P62280 158 aaKnown RBP eCLIP12.9□□□□□ -0.34
CLK3-227ENST00000570296 ARFRP1Q13795 201 aa12.9□□□□□ -0.34
CLK3-227ENST00000570296 OR10K2Q6IF99 312 aa12.9□□□□□ -0.34
CLK3-227ENST00000570296 SPSB3Q6PJ21 355 aa12.9□□□□□ -0.34
CLK3-227ENST00000570296 STHQ8IWL8 128 aa12.9□□□□□ -0.34
CLK3-227ENST00000570296 OR6M1Q8NGM8 313 aa12.9□□□□□ -0.34
CLK3-227ENST00000570296 OR4A4PQ8NGN8 299 aa12.9□□□□□ -0.34
CLK3-227ENST00000570296 VN1R17PQ8TDU5 208 aa12.9□□□□□ -0.34
CLK3-227ENST00000570296 BSCL2Q96G97 398 aaPredicted RBP12.9□□□□□ -0.34
CLK3-227ENST00000570296 CMTM3Q96MX0 182 aa12.9□□□□□ -0.34
CLK3-227ENST00000570296 THYN1Q9P016 225 aa12.9□□□□□ -0.34
CLK3-227ENST00000570296 OR2T8A6NH00 312 aa12.89□□□□□ -0.35
CLK3-227ENST00000570296 EI24O14681 340 aa12.89□□□□□ -0.35
CLK3-227ENST00000570296 CHEK1O14757 476 aa12.89□□□□□ -0.35
CLK3-227ENST00000570296 ZNF207O43670 478 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms