RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 RBPMSQ93062 196 aaKnown RBP6.73□□□□□ -1.33
SF3B3-212ENST00000568539 IL22RA2Q969J5 263 aa6.73□□□□□ -1.33
SF3B3-212ENST00000568539 R3HDM4Q96D70 268 aa6.73□□□□□ -1.33
SF3B3-212ENST00000568539 SEC22AQ96IW7 307 aa6.73□□□□□ -1.33
SF3B3-212ENST00000568539 JMJD8Q96S16 334 aa6.73□□□□□ -1.33
SF3B3-212ENST00000568539 AIFM2Q9BRQ8 373 aa6.73□□□□□ -1.33
SF3B3-212ENST00000568539 MOB4Q9Y3A3 225 aa6.73□□□□□ -1.33
SF3B3-212ENST00000568539 A0A0B4J2A0 478 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 C7orf66A4D0T2 115 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 MARCH11A6NNE9 402 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 NCBP2LA6PVI3 153 aaKnown RBP6.72□□□□□ -1.33
SF3B3-212ENST00000568539 SNRPGP15A8MWD9 76 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 RRHO14718 337 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 FGF16O43320 207 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 TCF21O43680 179 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 SLC25A17O43808 307 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 GPR137BO60478 399 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 IGKV1-5P01602 117 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 AMY1AP04745 511 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 RNASE1P07998 156 aaKnown RBP6.72□□□□□ -1.33
SF3B3-212ENST00000568539 IL6RP08887 468 aaPredicted RBP6.72□□□□□ -1.33
SF3B3-212ENST00000568539 P0C879 139 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 LORP23490 312 aaPredicted RBP6.72□□□□□ -1.33
SF3B3-212ENST00000568539 ERVK-16P61578 105 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 UBA52P62987 128 aaKnown RBP6.72□□□□□ -1.33
SF3B3-212ENST00000568539 TATDN3Q17R31 274 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 MRGPRG-AS1Q2M3A8 158 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 VMA21Q3ZAQ7 101 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 TMEM268Q5VZI3 342 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 OR4A47Q6IF82 309 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 LIN54Q6MZP7 749 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 TREML4Q6UXN2 200 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 SSX9Q7RTT3 188 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 ZNF695Q8IW36 515 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 PUSL1Q8N0Z8 303 aaKnown RBP6.72□□□□□ -1.33
SF3B3-212ENST00000568539 CADM3Q8N126 398 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 SLC35G3Q8N808 338 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 TEX45Q8NA69 505 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 DMBX1Q8NFW5 382 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 COQ8AQ8NI60 647 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 VSTM2AQ8TAG5 236 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 FBXL15Q9H469 300 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 GPN1Q9HCN4 374 aaPredicted RBP6.72□□□□□ -1.33
SF3B3-212ENST00000568539 TPSG1Q9NRR2 321 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 TMEM140Q9NV12 185 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 C1RLQ9NZP8 487 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 METTL1Q9UBP6 276 aaKnown RBP6.72□□□□□ -1.33
SF3B3-212ENST00000568539 SHPKQ9UHJ6 478 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 SIGLEC9Q9Y336 463 aa6.72□□□□□ -1.33
SF3B3-212ENST00000568539 KIAA2026Q5HYC2 2103 aa6.71□□□□□ -1.33
SF3B3-212ENST00000568539 PIGBOS1A0A0B4J2F0 54 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 A0A0G2JRQ6 117 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 DUXBA0A1W2PPF3 345 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 DBX1A6NMT0 343 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 M0QZK8 103 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 FCN1O00602 326 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 WIPF1O43516 503 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 CREBL2O60519 120 aaPredicted RBP6.71□□□□□ -1.34
SF3B3-212ENST00000568539 ATG12O94817 140 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 KBTBD11O94819 623 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 OR2A4O95047 310 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 AKR1C2P52895 323 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 C5orf64Q2M2E5 130 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 LYZL2Q7Z4W2 148 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 PPP1R27Q86WC6 154 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 C12orf45Q8N5I9 185 aaPredicted RBP6.71□□□□□ -1.34
SF3B3-212ENST00000568539 OR4A5Q8NH83 315 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 TMEM167AQ8TBQ9 72 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 LSM10Q969L4 123 aaKnown RBP6.71□□□□□ -1.34
SF3B3-212ENST00000568539 OR2A7Q96R45 310 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 PHB2Q99623 299 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 WNT10AQ9GZT5 417 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 RAB18Q9NP72 206 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 BET1LQ9NYM9 111 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 KIAA1456Q9P272 454 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 TMA7Q9Y2S6 64 aaKnown RBP6.71□□□□□ -1.34
SF3B3-212ENST00000568539 MMP24Q9Y5R2 645 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 ALG5Q9Y673 324 aa6.71□□□□□ -1.34
SF3B3-212ENST00000568539 ABCA1O95477 2261 aa6.7□□□□□ -1.34
SF3B3-212ENST00000568539 TRAV3A0A0B4J244 114 aa6.7□□□□□ -1.34
SF3B3-212ENST00000568539 FAM181BA6NEQ2 426 aa6.7□□□□□ -1.34
SF3B3-212ENST00000568539 SH2D7A6NKC9 451 aaPredicted RBP6.7□□□□□ -1.34
SF3B3-212ENST00000568539 UPK2O00526 184 aa6.7□□□□□ -1.34
SF3B3-212ENST00000568539 ADAP1O75689 374 aa6.7□□□□□ -1.34
SF3B3-212ENST00000568539 HLA-DRB1P01911 266 aa6.7□□□□□ -1.34
SF3B3-212ENST00000568539 FGF2P09038 288 aa6.7□□□□□ -1.34
SF3B3-212ENST00000568539 OR9G9P0C7N8 305 aa6.7□□□□□ -1.34
SF3B3-212ENST00000568539 VDAC1P21796 283 aa6.7□□□□□ -1.34
SF3B3-212ENST00000568539 RPL15P61313 204 aaKnown RBP6.7□□□□□ -1.34
SF3B3-212ENST00000568539 BLCAPP62952 87 aa6.7□□□□□ -1.34
SF3B3-212ENST00000568539 SSBP2P81877 361 aaPredicted RBP6.7□□□□□ -1.34
SF3B3-212ENST00000568539 ID3Q02535 119 aa6.7□□□□□ -1.34
SF3B3-212ENST00000568539 PJVKQ0ZLH3 352 aa6.7□□□□□ -1.34
SF3B3-212ENST00000568539 PLGLAQ15195 96 aa6.7□□□□□ -1.34
SF3B3-212ENST00000568539 PRSS8Q16651 343 aa6.7□□□□□ -1.34
SF3B3-212ENST00000568539 IZUMO4Q1ZYL8 232 aa6.7□□□□□ -1.34
SF3B3-212ENST00000568539 NMSQ5H8A3 153 aa6.7□□□□□ -1.34
SF3B3-212ENST00000568539 H2BFWTQ7Z2G1 175 aa6.7□□□□□ -1.34
SF3B3-212ENST00000568539 FAM219AQ8IW50 185 aa6.7□□□□□ -1.34
SF3B3-212ENST00000568539 GPR146Q96CH1 333 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms