RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 HSD17B10Q99714 261 aaKnown RBP10.78□□□□□ -0.68
CLN3-235ENST00000568497 NSG2Q9Y328 171 aa10.78□□□□□ -0.68
CLN3-235ENST00000568497 LINC00854A0A1B0GVQ3 168 aa10.77□□□□□ -0.69
CLN3-235ENST00000568497 IGF1P05019 195 aa10.77□□□□□ -0.69
CLN3-235ENST00000568497 LPAR6P43657 344 aa10.77□□□□□ -0.69
CLN3-235ENST00000568497 RAB25P57735 213 aa10.77□□□□□ -0.69
CLN3-235ENST00000568497 UBE2KP61086 200 aa10.77□□□□□ -0.69
CLN3-235ENST00000568497 SLC35B1P78383 322 aa10.77□□□□□ -0.69
CLN3-235ENST00000568497 CBX3Q13185 183 aa10.77□□□□□ -0.69
CLN3-235ENST00000568497 ZNF585BQ52M93 769 aa10.77□□□□□ -0.69
CLN3-235ENST00000568497 STEAP1BQ6NZ63 245 aa10.77□□□□□ -0.69
CLN3-235ENST00000568497 ZNF66Q6ZN08 573 aa10.77□□□□□ -0.69
CLN3-235ENST00000568497 TBC1D26Q86UD7 250 aa10.77□□□□□ -0.69
CLN3-235ENST00000568497 TMEM229BQ8NBD8 167 aa10.77□□□□□ -0.69
CLN3-235ENST00000568497 MARCH1Q8TCQ1 289 aa10.77□□□□□ -0.69
CLN3-235ENST00000568497 SMIM4Q8WVI0 70 aa10.77□□□□□ -0.69
CLN3-235ENST00000568497 PRR13Q9NZ81 148 aa10.77□□□□□ -0.69
CLN3-235ENST00000568497 PRELID3BQ9Y3B1 194 aa10.77□□□□□ -0.69
CLN3-235ENST00000568497 NUBP2Q9Y5Y2 271 aa10.77□□□□□ -0.69
CLN3-235ENST00000568497 MSGN1A6NI15 193 aa10.76□□□□□ -0.69
CLN3-235ENST00000568497 GPR31O00270 319 aa10.76□□□□□ -0.69
CLN3-235ENST00000568497 IGHG4P01861 327 aa10.76□□□□□ -0.69
CLN3-235ENST00000568497 IFNA6P05013 189 aa10.76□□□□□ -0.69
CLN3-235ENST00000568497 REG1AP05451 166 aa10.76□□□□□ -0.69
CLN3-235ENST00000568497 PSMB8P28062 276 aa10.76□□□□□ -0.69
CLN3-235ENST00000568497 LGALS7P47929 136 aa10.76□□□□□ -0.69
CLN3-235ENST00000568497 SP6Q3SY56 376 aa10.76□□□□□ -0.69
CLN3-235ENST00000568497 VMA21Q3ZAQ7 101 aa10.76□□□□□ -0.69
CLN3-235ENST00000568497 CXorf66Q5JRM2 361 aaPredicted RBP10.76□□□□□ -0.69
CLN3-235ENST00000568497 TEX38Q6PEX7 206 aa10.76□□□□□ -0.69
CLN3-235ENST00000568497 ZNF562Q6V9R5 426 aa10.76□□□□□ -0.69
CLN3-235ENST00000568497 ADAMTSL5Q6ZMM2 481 aa10.76□□□□□ -0.69
CLN3-235ENST00000568497 OR4S2Q8NH73 311 aa10.76□□□□□ -0.69
CLN3-235ENST00000568497 RAX2Q96IS3 184 aa10.76□□□□□ -0.69
CLN3-235ENST00000568497 FYTTD1Q96QD9 318 aaKnown RBP10.76□□□□□ -0.69
CLN3-235ENST00000568497 RNF5Q99942 180 aa10.76□□□□□ -0.69
CLN3-235ENST00000568497 RSRP1Q9BUV0 290 aa10.76□□□□□ -0.69
CLN3-235ENST00000568497 ZNF355PQ9NSJ1 428 aa10.76□□□□□ -0.69
CLN3-235ENST00000568497 ZMAT5Q9UDW3 170 aaKnown RBP10.76□□□□□ -0.69
CLN3-235ENST00000568497 SPDEFO95238 335 aa10.75□□□□□ -0.69
CLN3-235ENST00000568497 CD74P04233 296 aa10.75□□□□□ -0.69
CLN3-235ENST00000568497 RRASP10301 218 aa10.75□□□□□ -0.69
CLN3-235ENST00000568497 G6PCP35575 357 aa10.75□□□□□ -0.69
CLN3-235ENST00000568497 TAS2R19P59542 299 aa10.75□□□□□ -0.69
CLN3-235ENST00000568497 FOXE3Q13461 319 aa10.75□□□□□ -0.69
CLN3-235ENST00000568497 ACTBL2Q562R1 376 aa10.75□□□□□ -0.69
CLN3-235ENST00000568497 OR4A47Q6IF82 309 aa10.75□□□□□ -0.69
CLN3-235ENST00000568497 CCDC190Q86UF4 302 aa10.75□□□□□ -0.69
CLN3-235ENST00000568497 LHFPL1Q86WI0 220 aa10.75□□□□□ -0.69
CLN3-235ENST00000568497 LINC00482Q8N8I6 264 aa10.75□□□□□ -0.69
CLN3-235ENST00000568497 MINDY2Q8NBR6 621 aa10.75□□□□□ -0.69
CLN3-235ENST00000568497 OR6Q1Q8NGQ2 317 aa10.75□□□□□ -0.69
CLN3-235ENST00000568497 OR13C8Q8NGS7 320 aa10.75□□□□□ -0.69
CLN3-235ENST00000568497 SRSF12Q8WXF0 261 aaKnown RBP10.75□□□□□ -0.69
CLN3-235ENST00000568497 PHB2Q99623 299 aa10.75□□□□□ -0.69
CLN3-235ENST00000568497 HRASLSQ9HDD0 168 aa10.75□□□□□ -0.69
CLN3-235ENST00000568497 FOXA2Q9Y261 457 aaPredicted RBP10.75□□□□□ -0.69
CLN3-235ENST00000568497 S4R3C0 116 aa10.75□□□□□ -0.69
CLN3-235ENST00000568497 CGB1A6NKQ9 187 aa10.74□□□□□ -0.69
CLN3-235ENST00000568497 SLC22A5O76082 557 aa10.74□□□□□ -0.69
CLN3-235ENST00000568497 KRASP01116 189 aa10.74□□□□□ -0.69
CLN3-235ENST00000568497 IGKV1-39P01597 117 aa10.74□□□□□ -0.69
CLN3-235ENST00000568497 IGLV1-40P01703 118 aa10.74□□□□□ -0.69
CLN3-235ENST00000568497 IGKV1D-39P04432 117 aa10.74□□□□□ -0.69
CLN3-235ENST00000568497 IL6RP08887 468 aaPredicted RBP10.74□□□□□ -0.69
CLN3-235ENST00000568497 OR9G9P0C7N8 305 aa10.74□□□□□ -0.69
CLN3-235ENST00000568497 RAB9AP51151 201 aa10.74□□□□□ -0.69
CLN3-235ENST00000568497 OR2B8PP59922 312 aa10.74□□□□□ -0.69
CLN3-235ENST00000568497 ZNF695Q8IW36 515 aa10.74□□□□□ -0.69
CLN3-235ENST00000568497 PUSL1Q8N0Z8 303 aaKnown RBP10.74□□□□□ -0.69
CLN3-235ENST00000568497 TEX45Q8NA69 505 aa10.74□□□□□ -0.69
CLN3-235ENST00000568497 OR51S1Q8NGJ8 323 aa10.74□□□□□ -0.69
CLN3-235ENST00000568497 OSR1Q8TAX0 266 aaPredicted RBP10.74□□□□□ -0.69
CLN3-235ENST00000568497 DGCR14Q96DF8 476 aaKnown RBP10.74□□□□□ -0.69
CLN3-235ENST00000568497 RHOVQ96L33 236 aa10.74□□□□□ -0.69
CLN3-235ENST00000568497 RCHY1Q96PM5 261 aa10.74□□□□□ -0.69
CLN3-235ENST00000568497 THAP7Q9BT49 309 aaPredicted RBP10.74□□□□□ -0.69
CLN3-235ENST00000568497 MCRIP2Q9BUT9 160 aaKnown RBP10.74□□□□□ -0.69
CLN3-235ENST00000568497 TMEM140Q9NV12 185 aa10.74□□□□□ -0.69
CLN3-235ENST00000568497 MCUBQ9NWR8 336 aa10.74□□□□□ -0.69
CLN3-235ENST00000568497 HUWE1Q7Z6Z7 4374 aaKnown RBP10.73□□□□□ -0.69
CLN3-235ENST00000568497 ANKRD20A5PA0PJZ0 165 aa10.73□□□□□ -0.69
CLN3-235ENST00000568497 DBX1A6NMT0 343 aa10.73□□□□□ -0.69
CLN3-235ENST00000568497 CTDSPLO15194 276 aa10.73□□□□□ -0.69
CLN3-235ENST00000568497 GSTZ1O43708 216 aaPredicted RBP10.73□□□□□ -0.69
CLN3-235ENST00000568497 KBTBD11O94819 623 aa10.73□□□□□ -0.69
CLN3-235ENST00000568497 OR2A4O95047 310 aa10.73□□□□□ -0.69
CLN3-235ENST00000568497 AREGP15514 252 aa10.73□□□□□ -0.69
CLN3-235ENST00000568497 PIGPP57054 158 aa10.73□□□□□ -0.69
CLN3-235ENST00000568497 TPPP2P59282 170 aa10.73□□□□□ -0.69
CLN3-235ENST00000568497 CATR1Q13166 79 aa10.73□□□□□ -0.69
CLN3-235ENST00000568497 BAK1Q16611 211 aa10.73□□□□□ -0.69
CLN3-235ENST00000568497 SPINK9Q5DT21 86 aa10.73□□□□□ -0.69
CLN3-235ENST00000568497 MRPL41Q8IXM3 137 aaKnown RBP10.73□□□□□ -0.69
CLN3-235ENST00000568497 ZNF491Q8N8L2 437 aa10.73□□□□□ -0.69
CLN3-235ENST00000568497 ZBTB34Q8NCN2 500 aa10.73□□□□□ -0.69
CLN3-235ENST00000568497 ADAD2Q8NCV1 583 aaKnown RBP10.73□□□□□ -0.69
CLN3-235ENST00000568497 DMBX1Q8NFW5 382 aa10.73□□□□□ -0.69
CLN3-235ENST00000568497 TRIM63Q969Q1 353 aa10.73□□□□□ -0.69
CLN3-235ENST00000568497 OR2A7Q96R45 310 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms