RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 CMTM1Q8IZ96 169 aa14.42□□□□□ -0.1
CLN3-227ENST00000567495 VKORC1L1Q8N0U8 176 aa14.42□□□□□ -0.1
CLN3-227ENST00000567495 TTC9CQ8N5M4 171 aa14.42□□□□□ -0.1
CLN3-227ENST00000567495 TNCP24821 2201 aa14.42□□□□□ -0.1
CLN3-227ENST00000567495 HPRT1P00492 218 aa14.41□□□□□ -0.1
CLN3-227ENST00000567495 PMP2P02689 132 aa14.41□□□□□ -0.1
CLN3-227ENST00000567495 ELK1P19419 428 aa14.41□□□□□ -0.1
CLN3-227ENST00000567495 GNRHRP30968 328 aa14.41□□□□□ -0.1
CLN3-227ENST00000567495 RPL8P62917 257 aaKnown RBP14.41□□□□□ -0.1
CLN3-227ENST00000567495 FAM209BQ5JX69 171 aa14.41□□□□□ -0.1
CLN3-227ENST00000567495 ZNF343Q6P1L6 599 aa14.41□□□□□ -0.1
CLN3-227ENST00000567495 ACSM6Q6P461 480 aa14.41□□□□□ -0.1
CLN3-227ENST00000567495 ZNF818PQ6ZRF7 136 aa14.41□□□□□ -0.1
CLN3-227ENST00000567495 C15orf40Q8WUR7 153 aa14.41□□□□□ -0.1
CLN3-227ENST00000567495 GPHA2Q96T91 129 aa14.41□□□□□ -0.1
CLN3-227ENST00000567495 ZNF2Q9BSG1 426 aaPredicted RBP14.41□□□□□ -0.1
CLN3-227ENST00000567495 ELOVL1Q9BW60 279 aa14.41□□□□□ -0.1
CLN3-227ENST00000567495 PLEKHA2Q9HB19 425 aa14.41□□□□□ -0.1
CLN3-227ENST00000567495 BET1LQ9NYM9 111 aa14.41□□□□□ -0.1
CLN3-227ENST00000567495 ZNF256Q9Y2P7 627 aaPredicted RBP14.41□□□□□ -0.1
CLN3-227ENST00000567495 HPGDSO60760 199 aa14.4□□□□□ -0.1
CLN3-227ENST00000567495 SAP30O75446 220 aa14.4□□□□□ -0.1
CLN3-227ENST00000567495 FGF2P09038 288 aa14.4□□□□□ -0.1
CLN3-227ENST00000567495 APELAP0DMC3 54 aa14.4□□□□□ -0.1
CLN3-227ENST00000567495 NQO2P16083 231 aa14.4□□□□□ -0.1
CLN3-227ENST00000567495 S100GP29377 79 aa14.4□□□□□ -0.1
CLN3-227ENST00000567495 RCVRNP35243 200 aa14.4□□□□□ -0.1
CLN3-227ENST00000567495 HRH1P35367 487 aa14.4□□□□□ -0.1
CLN3-227ENST00000567495 RPL27AP46776 148 aaKnown RBP14.4□□□□□ -0.1
CLN3-227ENST00000567495 ALDH3B2P48448 385 aa14.4□□□□□ -0.1
CLN3-227ENST00000567495 POU2AF1Q16633 256 aa14.4□□□□□ -0.1
CLN3-227ENST00000567495 AADACL3Q5VUY0 350 aa14.4□□□□□ -0.1
CLN3-227ENST00000567495 SNX29P2Q8IUI4 249 aa14.4□□□□□ -0.1
CLN3-227ENST00000567495 LYSMD2Q8IV50 215 aa14.4□□□□□ -0.1
CLN3-227ENST00000567495 NECAP1Q8NC96 275 aa14.4□□□□□ -0.1
CLN3-227ENST00000567495 OR4C12Q96R67 309 aa14.4□□□□□ -0.1
CLN3-227ENST00000567495 NAA50Q9GZZ1 169 aaKnown RBP14.4□□□□□ -0.1
CLN3-227ENST00000567495 ZNF257Q9Y2Q1 563 aa14.4□□□□□ -0.1
CLN3-227ENST00000567495 FAM25AB3EWG3 89 aa14.39□□□□□ -0.11
CLN3-227ENST00000567495 FAM25CB3EWG5 89 aa14.39□□□□□ -0.11
CLN3-227ENST00000567495 FAM25GB3EWG6 89 aa14.39□□□□□ -0.11
CLN3-227ENST00000567495 DHFRP00374 187 aa14.39□□□□□ -0.11
CLN3-227ENST00000567495 HLA-GP17693 338 aa14.39□□□□□ -0.11
CLN3-227ENST00000567495 HLA-DMAP28067 261 aa14.39□□□□□ -0.11
CLN3-227ENST00000567495 RHOGP84095 191 aa14.39□□□□□ -0.11
CLN3-227ENST00000567495 TATDN3Q17R31 274 aa14.39□□□□□ -0.11
CLN3-227ENST00000567495 C10orf55Q5SWW7 151 aa14.39□□□□□ -0.11
CLN3-227ENST00000567495 LPCAT3Q6P1A2 487 aa14.39□□□□□ -0.11
CLN3-227ENST00000567495 SSX9Q7RTT3 188 aa14.39□□□□□ -0.11
CLN3-227ENST00000567495 OR6Q1Q8NGQ2 317 aa14.39□□□□□ -0.11
CLN3-227ENST00000567495 OR51H1Q8NH63 302 aa14.39□□□□□ -0.11
CLN3-227ENST00000567495 HRASLSQ9HDD0 168 aa14.39□□□□□ -0.11
CLN3-227ENST00000567495 SLC2A9Q9NRM0 540 aa14.39□□□□□ -0.11
CLN3-227ENST00000567495 COMMD9Q9P000 198 aa14.39□□□□□ -0.11
CLN3-227ENST00000567495 PEF1Q9UBV8 284 aaKnown RBP14.39□□□□□ -0.11
CLN3-227ENST00000567495 TRBV9A0A0B4J1U6 114 aa14.38□□□□□ -0.11
CLN3-227ENST00000567495 DPPA5A6NC42 116 aa14.38□□□□□ -0.11
CLN3-227ENST00000567495 NPIPB5A8MRT5 1133 aa14.38□□□□□ -0.11
CLN3-227ENST00000567495 PGLYRP1O75594 196 aaPredicted RBP14.38□□□□□ -0.11
CLN3-227ENST00000567495 ZNF735P0CB33 412 aa14.38□□□□□ -0.11
CLN3-227ENST00000567495 TSPAN5P62079 268 aa14.38□□□□□ -0.11
CLN3-227ENST00000567495 ATP5G2Q06055 141 aa14.38□□□□□ -0.11
CLN3-227ENST00000567495 OR4A47Q6IF82 309 aa14.38□□□□□ -0.11
CLN3-227ENST00000567495 B9D2Q9BPU9 175 aa14.38□□□□□ -0.11
CLN3-227ENST00000567495 ANKRD34BA5PLL1 514 aa14.37□□□□□ -0.11
CLN3-227ENST00000567495 TEX22C9J3V5 150 aa14.37□□□□□ -0.11
CLN3-227ENST00000567495 GPR31O00270 319 aa14.37□□□□□ -0.11
CLN3-227ENST00000567495 F2RP25116 425 aa14.37□□□□□ -0.11
CLN3-227ENST00000567495 ERVK-16P61578 105 aa14.37□□□□□ -0.11
CLN3-227ENST00000567495 CD69Q07108 199 aa14.37□□□□□ -0.11
CLN3-227ENST00000567495 KLF5Q13887 457 aaPredicted RBP14.37□□□□□ -0.11
CLN3-227ENST00000567495 CADM3Q8N126 398 aa14.37□□□□□ -0.11
CLN3-227ENST00000567495 FYTTD1Q96QD9 318 aaKnown RBP14.37□□□□□ -0.11
CLN3-227ENST00000567495 BCL7BQ9BQE9 202 aa14.37□□□□□ -0.11
CLN3-227ENST00000567495 SRSF8Q9BRL6 282 aaKnown RBP14.37□□□□□ -0.11
CLN3-227ENST00000567495 AKIP1Q9NQ31 210 aa14.37□□□□□ -0.11
CLN3-227ENST00000567495 LSM4Q9Y4Z0 139 aaKnown RBP14.37□□□□□ -0.11
CLN3-227ENST00000567495 IL6RP08887 468 aaPredicted RBP14.36□□□□□ -0.11
CLN3-227ENST00000567495 VAX1Q5SQQ9 334 aa14.36□□□□□ -0.11
CLN3-227ENST00000567495 DMBX1Q8NFW5 382 aa14.36□□□□□ -0.11
CLN3-227ENST00000567495 DGCR14Q96DF8 476 aaKnown RBP14.36□□□□□ -0.11
CLN3-227ENST00000567495 PRR25Q96S07 402 aa14.36□□□□□ -0.11
CLN3-227ENST00000567495 COMMD5Q9GZQ3 224 aa14.36□□□□□ -0.11
CLN3-227ENST00000567495 HMX3A6NHT5 357 aa14.35□□□□□ -0.11
CLN3-227ENST00000567495 UPK2O00526 184 aa14.35□□□□□ -0.11
CLN3-227ENST00000567495 LY86O95711 162 aa14.35□□□□□ -0.11
CLN3-227ENST00000567495 RLN1P04808 185 aa14.35□□□□□ -0.11
CLN3-227ENST00000567495 CRYGCP07315 174 aa14.35□□□□□ -0.11
CLN3-227ENST00000567495 HIST1H1BP16401 226 aaKnown RBP14.35□□□□□ -0.11
CLN3-227ENST00000567495 TBPP20226 339 aa14.35□□□□□ -0.11
CLN3-227ENST00000567495 ZNF45Q02386 682 aa14.35□□□□□ -0.11
CLN3-227ENST00000567495 RPEL1Q2QD12 228 aa14.35□□□□□ -0.11
CLN3-227ENST00000567495 RAB2BQ8WUD1 216 aa14.35□□□□□ -0.11
CLN3-227ENST00000567495 FAM212BQ9NTI7 297 aaPredicted RBP14.35□□□□□ -0.11
CLN3-227ENST00000567495 TMEM140Q9NV12 185 aa14.35□□□□□ -0.11
CLN3-227ENST00000567495 EXTL2Q9UBQ6 330 aa14.35□□□□□ -0.11
CLN3-227ENST00000567495 RBMXL2O75526 392 aaKnown RBP14.34□□□□□ -0.11
CLN3-227ENST00000567495 S1PR2O95136 353 aa14.34□□□□□ -0.11
CLN3-227ENST00000567495 PRH1P02810 166 aa14.34□□□□□ -0.11
CLN3-227ENST00000567495 PSMB6P28072 239 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms