RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 ZNF45Q02386 682 aa11.32□□□□□ -0.6
CLN3-222ENST00000566083 HAGHQ16775 308 aa11.32□□□□□ -0.6
CLN3-222ENST00000566083 PUSL1Q8N0Z8 303 aaKnown RBP11.32□□□□□ -0.6
CLN3-222ENST00000566083 BEST4Q8NFU0 473 aa11.32□□□□□ -0.6
CLN3-222ENST00000566083 IL17DQ8TAD2 202 aa11.32□□□□□ -0.6
CLN3-222ENST00000566083 LGALS14Q8TCE9 139 aa11.32□□□□□ -0.6
CLN3-222ENST00000566083 BORCS5Q969J3 196 aa11.32□□□□□ -0.6
CLN3-222ENST00000566083 DIABLOQ9NR28 239 aa11.32□□□□□ -0.6
CLN3-222ENST00000566083 IGKV1D-13A0A0B4J2D9 117 aa11.31□□□□□ -0.6
CLN3-222ENST00000566083 SMIM30A4D0T7 59 aa11.31□□□□□ -0.6
CLN3-222ENST00000566083 RBFOX2O43251 390 aaKnown RBP eCLIP11.31□□□□□ -0.6
CLN3-222ENST00000566083 RBMXL2O75526 392 aaKnown RBP11.31□□□□□ -0.6
CLN3-222ENST00000566083 OR2J3O76001 311 aa11.31□□□□□ -0.6
CLN3-222ENST00000566083 PRH1P02810 166 aa11.31□□□□□ -0.6
CLN3-222ENST00000566083 CRYGCP07315 174 aa11.31□□□□□ -0.6
CLN3-222ENST00000566083 ZNF735P0CB33 412 aa11.31□□□□□ -0.6
CLN3-222ENST00000566083 IGKV1-13P0DP09 117 aa11.31□□□□□ -0.6
CLN3-222ENST00000566083 SDC2P34741 201 aa11.31□□□□□ -0.6
CLN3-222ENST00000566083 CBX5P45973 191 aa11.31□□□□□ -0.6
CLN3-222ENST00000566083 RPL8P62917 257 aaKnown RBP11.31□□□□□ -0.6
CLN3-222ENST00000566083 CATR1Q13166 79 aa11.31□□□□□ -0.6
CLN3-222ENST00000566083 EIF4EBP1Q13541 118 aaPredicted RBP11.31□□□□□ -0.6
CLN3-222ENST00000566083 FAM106AQ4KMX7 169 aa11.31□□□□□ -0.6
CLN3-222ENST00000566083 OR2B11Q5JQS5 317 aa11.31□□□□□ -0.6
CLN3-222ENST00000566083 GPHB5Q86YW7 130 aa11.31□□□□□ -0.6
CLN3-222ENST00000566083 FYTTD1Q96QD9 318 aaKnown RBP11.31□□□□□ -0.6
CLN3-222ENST00000566083 EDA2RQ9HAV5 297 aa11.31□□□□□ -0.6
CLN3-222ENST00000566083 BET1LQ9NYM9 111 aa11.31□□□□□ -0.6
CLN3-222ENST00000566083 TAS2R8Q9NYW2 309 aa11.31□□□□□ -0.6
CLN3-222ENST00000566083 FBXL7Q9UJT9 491 aa11.31□□□□□ -0.6
CLN3-222ENST00000566083 SSX5O60225 188 aa11.3□□□□□ -0.6
CLN3-222ENST00000566083 FGF2P09038 288 aa11.3□□□□□ -0.6
CLN3-222ENST00000566083 FCGR2CP31995 323 aa11.3□□□□□ -0.6
CLN3-222ENST00000566083 CD81P60033 236 aa11.3□□□□□ -0.6
CLN3-222ENST00000566083 KLK9Q2XQG4 91 aa11.3□□□□□ -0.6
CLN3-222ENST00000566083 CD300EQ496F6 205 aaPredicted RBP11.3□□□□□ -0.6
CLN3-222ENST00000566083 C10orf55Q5SWW7 151 aa11.3□□□□□ -0.6
CLN3-222ENST00000566083 HOGA1Q86XE5 327 aa11.3□□□□□ -0.6
CLN3-222ENST00000566083 CROCCP3Q8IVE0 287 aa11.3□□□□□ -0.6
CLN3-222ENST00000566083 VKORC1L1Q8N0U8 176 aa11.3□□□□□ -0.6
CLN3-222ENST00000566083 CD300LFQ8TDQ1 290 aa11.3□□□□□ -0.6
CLN3-222ENST00000566083 EEF1AKMT3Q96AZ1 226 aa11.3□□□□□ -0.6
CLN3-222ENST00000566083 CXorf58Q96LI9 332 aa11.3□□□□□ -0.6
CLN3-222ENST00000566083 SRSF8Q9BRL6 282 aaKnown RBP11.3□□□□□ -0.6
CLN3-222ENST00000566083 ADAM30Q9UKF2 790 aa11.3□□□□□ -0.6
CLN3-222ENST00000566083 KLK9Q9UKQ9 250 aa11.3□□□□□ -0.6
CLN3-222ENST00000566083 TRAV18A0A075B6X5 111 aa11.29□□□□□ -0.6
CLN3-222ENST00000566083 TRBV7-1A0A0A6YYK4 115 aa11.29□□□□□ -0.6
CLN3-222ENST00000566083 HMX3A6NHT5 357 aa11.29□□□□□ -0.6
CLN3-222ENST00000566083 TEX22C9J3V5 150 aa11.29□□□□□ -0.6
CLN3-222ENST00000566083 CYB5BO43169 146 aa11.29□□□□□ -0.6
CLN3-222ENST00000566083 IL6RP08887 468 aaPredicted RBP11.29□□□□□ -0.6
CLN3-222ENST00000566083 DEFA4P12838 97 aa11.29□□□□□ -0.6
CLN3-222ENST00000566083 PSMB6P28072 239 aa11.29□□□□□ -0.6
CLN3-222ENST00000566083 TAS2R31P59538 309 aa11.29□□□□□ -0.6
CLN3-222ENST00000566083 DEFB114Q30KQ6 69 aa11.29□□□□□ -0.6
CLN3-222ENST00000566083 OR4A47Q6IF82 309 aa11.29□□□□□ -0.6
CLN3-222ENST00000566083 ZNF773Q6PK81 442 aa11.29□□□□□ -0.6
CLN3-222ENST00000566083 OR13F1Q8NGS4 319 aa11.29□□□□□ -0.6
CLN3-222ENST00000566083 SECTM1Q8WVN6 248 aa11.29□□□□□ -0.6
CLN3-222ENST00000566083 NEURL2Q9BR09 285 aa11.29□□□□□ -0.6
CLN3-222ENST00000566083 THYN1Q9P016 225 aa11.29□□□□□ -0.6
CLN3-222ENST00000566083 CEPT1Q9Y6K0 416 aa11.29□□□□□ -0.6
CLN3-222ENST00000566083 C2orf70A6NJV1 201 aa11.28□□□□□ -0.6
CLN3-222ENST00000566083 HPRT1P00492 218 aa11.28□□□□□ -0.6
CLN3-222ENST00000566083 PPYP01298 95 aa11.28□□□□□ -0.6
CLN3-222ENST00000566083 FOLR2P14207 255 aa11.28□□□□□ -0.6
CLN3-222ENST00000566083 HLA-GP17693 338 aa11.28□□□□□ -0.6
CLN3-222ENST00000566083 ARL3P36405 182 aa11.28□□□□□ -0.6
CLN3-222ENST00000566083 MXD1Q05195 221 aa11.28□□□□□ -0.6
CLN3-222ENST00000566083 TIMM50Q3ZCQ8 353 aa11.28□□□□□ -0.6
CLN3-222ENST00000566083 IDNKQ5T6J7 187 aa11.28□□□□□ -0.6
CLN3-222ENST00000566083 THOC7Q6I9Y2 204 aaKnown RBP11.28□□□□□ -0.6
CLN3-222ENST00000566083 SLC16A13Q7RTY0 426 aa11.28□□□□□ -0.6
CLN3-222ENST00000566083 SPAG16Q8N0X2 631 aa11.28□□□□□ -0.6
CLN3-222ENST00000566083 GIMAP1Q8WWP7 306 aa11.28□□□□□ -0.6
CLN3-222ENST00000566083 HRASLSQ9HDD0 168 aa11.28□□□□□ -0.6
CLN3-222ENST00000566083 ZC4H2Q9NQZ6 224 aa11.28□□□□□ -0.6
CLN3-222ENST00000566083 TENM2Q9NT68 2774 aa11.28□□□□□ -0.6
CLN3-222ENST00000566083 RYR2Q92736 4967 aa11.27□□□□□ -0.6
CLN3-222ENST00000566083 LOC100506127A0A0U1RQW1 187 aa11.27□□□□□ -0.6
CLN3-222ENST00000566083 LCE6AA0A183 80 aa11.27□□□□□ -0.6
CLN3-222ENST00000566083 IZUMO1RA6ND01 250 aa11.27□□□□□ -0.6
CLN3-222ENST00000566083 OR2C1O95371 312 aa11.27□□□□□ -0.6
CLN3-222ENST00000566083 NQO2P16083 231 aa11.27□□□□□ -0.6
CLN3-222ENST00000566083 CTRB1P17538 263 aa11.27□□□□□ -0.6
CLN3-222ENST00000566083 BRWD1-AS2P59051 145 aa11.27□□□□□ -0.6
CLN3-222ENST00000566083 ANKRD55Q3KP44 614 aa11.27□□□□□ -0.6
CLN3-222ENST00000566083 CTRB2Q6GPI1 263 aa11.27□□□□□ -0.6
CLN3-222ENST00000566083 LINC00322Q6ZN03 302 aaPredicted RBP11.27□□□□□ -0.6
CLN3-222ENST00000566083 SSX9Q7RTT3 188 aa11.27□□□□□ -0.6
CLN3-222ENST00000566083 HSD17B13Q7Z5P4 300 aaPredicted RBP11.27□□□□□ -0.6
CLN3-222ENST00000566083 COMMD5Q9GZQ3 224 aa11.27□□□□□ -0.6
CLN3-222ENST00000566083 SLC5A7Q9GZV3 580 aa11.27□□□□□ -0.6
CLN3-222ENST00000566083 CCL28Q9NRJ3 127 aa11.27□□□□□ -0.6
CLN3-222ENST00000566083 ZNF785A8K8V0 405 aa11.26□□□□□ -0.61
CLN3-222ENST00000566083 PPP5D1E7EU14 171 aa11.26□□□□□ -0.61
CLN3-222ENST00000566083 CBLN1P23435 193 aa11.26□□□□□ -0.61
CLN3-222ENST00000566083 POU2AF1Q16633 256 aa11.26□□□□□ -0.61
CLN3-222ENST00000566083 GUCA2BQ16661 112 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms