RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 NQO2P16083 231 aa10.39□□□□□ -0.75
CLK3-216ENST00000564468 TBPP20226 339 aa10.39□□□□□ -0.75
CLK3-216ENST00000564468 MRGPRG-AS1Q2M3A8 158 aa10.39□□□□□ -0.75
CLK3-216ENST00000564468 VAX1Q5SQQ9 334 aa10.39□□□□□ -0.75
CLK3-216ENST00000564468 C9orf66Q5T8R8 295 aa10.39□□□□□ -0.75
CLK3-216ENST00000564468 PUSL1Q8N0Z8 303 aaKnown RBP10.39□□□□□ -0.75
CLK3-216ENST00000564468 OR51H1Q8NH63 302 aa10.39□□□□□ -0.75
CLK3-216ENST00000564468 DYNC2LI1Q8TCX1 351 aa10.39□□□□□ -0.75
CLK3-216ENST00000564468 GPHA2Q96T91 129 aa10.39□□□□□ -0.75
CLK3-216ENST00000564468 PLEKHA2Q9HB19 425 aa10.39□□□□□ -0.75
CLK3-216ENST00000564468 COA4Q9NYJ1 87 aa10.39□□□□□ -0.75
CLK3-216ENST00000564468 BET1LQ9NYM9 111 aa10.39□□□□□ -0.75
CLK3-216ENST00000564468 LINC01619G3V211 115 aa10.38□□□□□ -0.75
CLK3-216ENST00000564468 GABARAPH6UMI1 98 aa10.38□□□□□ -0.75
CLK3-216ENST00000564468 PGLYRP1O75594 196 aaPredicted RBP10.38□□□□□ -0.75
CLK3-216ENST00000564468 HSPB1P04792 205 aaKnown RBP10.38□□□□□ -0.75
CLK3-216ENST00000564468 OR9G9P0C7N8 305 aa10.38□□□□□ -0.75
CLK3-216ENST00000564468 F2RP25116 425 aa10.38□□□□□ -0.75
CLK3-216ENST00000564468 RPL27AP46776 148 aaKnown RBP10.38□□□□□ -0.75
CLK3-216ENST00000564468 UCP3P55916 312 aa10.38□□□□□ -0.75
CLK3-216ENST00000564468 BRWD1-AS2P59051 145 aa10.38□□□□□ -0.75
CLK3-216ENST00000564468 SSBP1Q04837 148 aaKnown RBP10.38□□□□□ -0.75
CLK3-216ENST00000564468 RNASE10Q5GAN6 216 aaKnown RBP10.38□□□□□ -0.75
CLK3-216ENST00000564468 SSX9Q7RTT3 188 aa10.38□□□□□ -0.75
CLK3-216ENST00000564468 VKORC1L1Q8N0U8 176 aa10.38□□□□□ -0.75
CLK3-216ENST00000564468 OR52I2Q8NH67 350 aa10.38□□□□□ -0.75
CLK3-216ENST00000564468 CASTOR1Q8WTX7 329 aa10.38□□□□□ -0.75
CLK3-216ENST00000564468 ISOC1Q96CN7 298 aa10.38□□□□□ -0.75
CLK3-216ENST00000564468 USMG5Q96IX5 58 aa10.38□□□□□ -0.75
CLK3-216ENST00000564468 TINAGL1Q9GZM7 467 aaPredicted RBP10.38□□□□□ -0.75
CLK3-216ENST00000564468 MIXL1Q9H2W2 232 aa10.38□□□□□ -0.75
CLK3-216ENST00000564468 COMMD9Q9P000 198 aa10.38□□□□□ -0.75
CLK3-216ENST00000564468 MTFP1Q9UDX5 166 aa10.38□□□□□ -0.75
CLK3-216ENST00000564468 CTDSP2O14595 271 aa10.37□□□□□ -0.75
CLK3-216ENST00000564468 RAMP3O60896 148 aa10.37□□□□□ -0.75
CLK3-216ENST00000564468 FGF2P09038 288 aa10.37□□□□□ -0.75
CLK3-216ENST00000564468 INSL3P51460 131 aa10.37□□□□□ -0.75
CLK3-216ENST00000564468 ERVK-16P61578 105 aa10.37□□□□□ -0.75
CLK3-216ENST00000564468 RPL8P62917 257 aaKnown RBP10.37□□□□□ -0.75
CLK3-216ENST00000564468 EGFEM1PQ0D2K5 195 aa10.37□□□□□ -0.75
CLK3-216ENST00000564468 POU2AF1Q16633 256 aa10.37□□□□□ -0.75
CLK3-216ENST00000564468 ASPHD1Q5U4P2 390 aa10.37□□□□□ -0.75
CLK3-216ENST00000564468 OR4A47Q6IF82 309 aa10.37□□□□□ -0.75
CLK3-216ENST00000564468 SLC38A6Q8IZM9 456 aa10.37□□□□□ -0.75
CLK3-216ENST00000564468 ARRDC1Q8N5I2 433 aa10.37□□□□□ -0.75
CLK3-216ENST00000564468 TTC9CQ8N5M4 171 aa10.37□□□□□ -0.75
CLK3-216ENST00000564468 DMBX1Q8NFW5 382 aa10.37□□□□□ -0.75
CLK3-216ENST00000564468 DGCR14Q96DF8 476 aaKnown RBP10.37□□□□□ -0.75
CLK3-216ENST00000564468 DIRAS2Q96HU8 199 aa10.37□□□□□ -0.75
CLK3-216ENST00000564468 ABHD1Q96SE0 405 aa10.37□□□□□ -0.75
CLK3-216ENST00000564468 FXYD6Q9H0Q3 95 aa10.37□□□□□ -0.75
CLK3-216ENST00000564468 RANGRFQ9HD47 186 aaPredicted RBP10.37□□□□□ -0.75
CLK3-216ENST00000564468 HRASLSQ9HDD0 168 aa10.37□□□□□ -0.75
CLK3-216ENST00000564468 AURKAIP1Q9NWT8 199 aaPredicted RBP10.37□□□□□ -0.75
CLK3-216ENST00000564468 KLK11Q9UBX7 282 aa10.37□□□□□ -0.75
CLK3-216ENST00000564468 DPPA5A6NC42 116 aa10.36□□□□□ -0.75
CLK3-216ENST00000564468 CCDC160A6NGH7 325 aa10.36□□□□□ -0.75
CLK3-216ENST00000564468 SEC14L6B5MCN3 397 aa10.36□□□□□ -0.75
CLK3-216ENST00000564468 H3BMQ9 156 aa10.36□□□□□ -0.75
CLK3-216ENST00000564468 OVOL1O14753 267 aa10.36□□□□□ -0.75
CLK3-216ENST00000564468 DHFRP00374 187 aa10.36□□□□□ -0.75
CLK3-216ENST00000564468 IGHV3-11P01762 117 aa10.36□□□□□ -0.75
CLK3-216ENST00000564468 RLN1P04808 185 aa10.36□□□□□ -0.75
CLK3-216ENST00000564468 ZP3P21754 424 aa10.36□□□□□ -0.75
CLK3-216ENST00000564468 TAS2R19P59542 299 aa10.36□□□□□ -0.75
CLK3-216ENST00000564468 RNASE12Q5GAN4 147 aaKnown RBP10.36□□□□□ -0.75
CLK3-216ENST00000564468 LAX1Q8IWV1 398 aa10.36□□□□□ -0.75
CLK3-216ENST00000564468 TMEM229BQ8NBD8 167 aa10.36□□□□□ -0.75
CLK3-216ENST00000564468 ADAD2Q8NCV1 583 aaKnown RBP10.36□□□□□ -0.75
CLK3-216ENST00000564468 MRAPQ8TCY5 172 aa10.36□□□□□ -0.75
CLK3-216ENST00000564468 RSRP1Q9BUV0 290 aa10.36□□□□□ -0.75
CLK3-216ENST00000564468 C6orf62Q9GZU0 229 aaPredicted RBP10.36□□□□□ -0.75
CLK3-216ENST00000564468 FAM212BQ9NTI7 297 aaPredicted RBP10.36□□□□□ -0.75
CLK3-216ENST00000564468 FAM223BA6NKX1 122 aa10.35□□□□□ -0.75
CLK3-216ENST00000564468 M0QYG6 137 aa10.35□□□□□ -0.75
CLK3-216ENST00000564468 CTDSPLO15194 276 aa10.35□□□□□ -0.75
CLK3-216ENST00000564468 S1PR2O95136 353 aa10.35□□□□□ -0.75
CLK3-216ENST00000564468 PRB2P02812 416 aaPredicted RBP10.35□□□□□ -0.75
CLK3-216ENST00000564468 CD3DP04234 171 aa10.35□□□□□ -0.75
CLK3-216ENST00000564468 APELAP0DMC3 54 aa10.35□□□□□ -0.75
CLK3-216ENST00000564468 HLA-GP17693 338 aa10.35□□□□□ -0.75
CLK3-216ENST00000564468 HOXD3P31249 432 aaPredicted RBP10.35□□□□□ -0.75
CLK3-216ENST00000564468 DGCR2P98153 550 aa10.35□□□□□ -0.75
CLK3-216ENST00000564468 IL18Q14116 193 aa10.35□□□□□ -0.75
CLK3-216ENST00000564468 PHLDA2Q53GA4 152 aa10.35□□□□□ -0.75
CLK3-216ENST00000564468 FAM209BQ5JX69 171 aa10.35□□□□□ -0.75
CLK3-216ENST00000564468 FAM223AQ8IWN6 122 aa10.35□□□□□ -0.75
CLK3-216ENST00000564468 CADM3Q8N126 398 aa10.35□□□□□ -0.75
CLK3-216ENST00000564468 DCUN1D4Q92564 292 aa10.35□□□□□ -0.75
CLK3-216ENST00000564468 ZNF486Q96H40 463 aaPredicted RBP10.35□□□□□ -0.75
CLK3-216ENST00000564468 FYTTD1Q96QD9 318 aaKnown RBP10.35□□□□□ -0.75
CLK3-216ENST00000564468 COMMD5Q9GZQ3 224 aa10.35□□□□□ -0.75
CLK3-216ENST00000564468 ALX4Q9H161 411 aaPredicted RBP10.35□□□□□ -0.75
CLK3-216ENST00000564468 SLC2A9Q9NRM0 540 aa10.35□□□□□ -0.75
CLK3-216ENST00000564468 ZNF257Q9Y2Q1 563 aa10.35□□□□□ -0.75
CLK3-216ENST00000564468 IGHV4OR15-8A0A075B7B6 117 aa10.34□□□□□ -0.75
CLK3-216ENST00000564468 A0A087WW49 117 aa10.34□□□□□ -0.75
CLK3-216ENST00000564468 NPIPB5A8MRT5 1133 aa10.34□□□□□ -0.75
CLK3-216ENST00000564468 UPK2O00526 184 aa10.34□□□□□ -0.75
CLK3-216ENST00000564468 RAB3DO95716 219 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms