RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 ZNF266Q14584 549 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 IZUMO4Q1ZYL8 232 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 MIDNQ504T8 468 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 FAM120AOSQ5T036 256 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 C11orf42Q8N5U0 333 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 ZNF383Q8NA42 475 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 UBAC2Q8NBM4 344 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 OR52E5Q8NH55 327 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 OSR1Q8TAX0 266 aaPredicted RBP7.27□□□□□ -1.25
VPS39-207ENST00000563692 RNF141Q8WVD5 230 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 LHX4Q969G2 390 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 PCGF1Q9BSM1 259 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 CLEC7AQ9BXN2 247 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 C11orf1Q9H5F2 150 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 NARFLQ9H6Q4 476 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 FKBP11Q9NYL4 201 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 ONECUT1Q9UBC0 465 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 HSPB7Q9UBY9 170 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 FBXL17Q9UF56 701 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 IGHV2-26A0A0B4J1V2 119 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 LINC00862A6NCI5 91 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 CEBPZOSA8MTT3 80 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 H7C2Y5 167 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 TXNL1O43396 289 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 ENSAO43768 121 aaKnown RBP7.26□□□□□ -1.25
VPS39-207ENST00000563692 NXPH3O95157 252 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 IFNA17P01571 189 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 SULT1A1P50225 295 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 RAB13P51153 203 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 ZNF137PP52743 207 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 SPCS3P61009 180 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 HBG1P69891 147 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 HBG2P69892 147 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 NHLH2Q02577 135 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 SCGB2A2Q13296 93 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 UTF1Q5T230 341 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 RPL7L1Q6DKI1 246 aaKnown RBP7.26□□□□□ -1.25
VPS39-207ENST00000563692 C1orf229Q6ZS94 237 aaPredicted RBP7.26□□□□□ -1.25
VPS39-207ENST00000563692 SSX9Q7RTT3 188 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 PDPNQ86YL7 162 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 TGIF2LXQ8IUE1 241 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 BEND2Q8NDZ0 799 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 OR5AN1Q8NGI8 311 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 OR1S2Q8NGQ3 325 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 FLYWCH2Q96CP2 140 aaKnown RBP7.26□□□□□ -1.25
VPS39-207ENST00000563692 TSNAXQ99598 290 aaKnown RBP7.26□□□□□ -1.25
VPS39-207ENST00000563692 MDFIQ99750 246 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 SMIM3Q9BZL3 60 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 HIPK2Q9H2X6 1198 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 RBKSQ9H477 322 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 PFDN2Q9UHV9 154 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 NUP50Q9UKX7 468 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 ATRQ13535 2644 aa7.26□□□□□ -1.25
VPS39-207ENST00000563692 BUB1B-PAK6H3BSN5 160 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 SHOXO15266 292 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 FOXH1O75593 365 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 IFNA5P01569 189 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 IAPPP10997 89 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 CEACAM3P40198 252 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 LGALS7P47929 136 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 DVL1P1P54792 670 aaPredicted RBP7.25□□□□□ -1.25
VPS39-207ENST00000563692 PAX9P55771 341 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 ARF6P62330 175 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 POU2AF1Q16633 256 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 ATP6V1FQ16864 119 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 HLA-DRB5Q30154 266 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 TMEM177Q53S58 311 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 SPANXN5Q5MJ07 72 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 ZNF429Q86V71 674 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 TEX29Q8N6K0 151 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 KIR3DL3Q8N743 410 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 OR4C13Q8NGP0 309 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 OR5C1Q8NGR4 320 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 OR4A5Q8NH83 315 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 SPATA3Q8NHX4 192 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 VSTM2AQ8TAG5 236 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 DTD1Q8TEA8 209 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 ST6GALNAC6Q969X2 333 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 RHOVQ96L33 236 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 ENY2Q9NPA8 101 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 TMEM140Q9NV12 185 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 PRNDQ9UKY0 176 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 WASHC3Q9Y3C0 194 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 STRAPQ9Y3F4 350 aaKnown RBP7.25□□□□□ -1.25
VPS39-207ENST00000563692 INSIG2Q9Y5U4 225 aa7.25□□□□□ -1.25
VPS39-207ENST00000563692 IGSF23A1L1A6 192 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 LEUTXA8MZ59 168 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 C22orf46C9J442 243 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 H0YJW9 148 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 CST7O76096 145 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 TMEM50AO95807 157 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 IGLV1-47P01700 117 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 IGHV2-5P01817 119 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 MSMBP08118 114 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 OR9G9P0C7N8 305 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 SEC11BP0C7V7 166 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 PRTN3P24158 256 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 HTR1DP28221 377 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 RAB5CP51148 216 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 DYNLT3P51808 116 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms