RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 HLA-DMAP28067 261 aa12.04□□□□□ -0.48
VPS39-203ENST00000561797 TAS2R46P59540 309 aa12.04□□□□□ -0.48
VPS39-203ENST00000561797 CD69Q07108 199 aa12.04□□□□□ -0.48
VPS39-203ENST00000561797 ACSM6Q6P461 480 aa12.04□□□□□ -0.48
VPS39-203ENST00000561797 MZT2AQ6P582 158 aa12.04□□□□□ -0.48
VPS39-203ENST00000561797 DHRS11Q6UWP2 260 aa12.04□□□□□ -0.48
VPS39-203ENST00000561797 LYSMD2Q8IV50 215 aa12.04□□□□□ -0.48
VPS39-203ENST00000561797 FYTTD1Q96QD9 318 aaKnown RBP12.04□□□□□ -0.48
VPS39-203ENST00000561797 MRPS26Q9BYN8 205 aaKnown RBP12.04□□□□□ -0.48
VPS39-203ENST00000561797 BRI3O95415 125 aa12.03□□□□□ -0.48
VPS39-203ENST00000561797 MYOD1P15172 320 aa12.03□□□□□ -0.48
VPS39-203ENST00000561797 ZP3P21754 424 aa12.03□□□□□ -0.48
VPS39-203ENST00000561797 GNRHRP30968 328 aa12.03□□□□□ -0.48
VPS39-203ENST00000561797 RPL27AP46776 148 aaKnown RBP12.03□□□□□ -0.48
VPS39-203ENST00000561797 RHOGP84095 191 aa12.03□□□□□ -0.48
VPS39-203ENST00000561797 DCTN2Q13561 401 aaKnown RBP12.03□□□□□ -0.48
VPS39-203ENST00000561797 AADACL3Q5VUY0 350 aa12.03□□□□□ -0.48
VPS39-203ENST00000561797 TTC9CQ8N5M4 171 aa12.03□□□□□ -0.48
VPS39-203ENST00000561797 GPX8Q8TED1 209 aa12.03□□□□□ -0.48
VPS39-203ENST00000561797 MOB3AQ96BX8 217 aa12.03□□□□□ -0.48
VPS39-203ENST00000561797 USMG5Q96IX5 58 aa12.03□□□□□ -0.48
VPS39-203ENST00000561797 OR4C12Q96R67 309 aa12.03□□□□□ -0.48
VPS39-203ENST00000561797 HRASLSQ9HDD0 168 aa12.03□□□□□ -0.48
VPS39-203ENST00000561797 AKIP1Q9NQ31 210 aa12.03□□□□□ -0.48
VPS39-203ENST00000561797 PEF1Q9UBV8 284 aaKnown RBP12.03□□□□□ -0.48
VPS39-203ENST00000561797 DPPA5A6NC42 116 aa12.02□□□□□ -0.49
VPS39-203ENST00000561797 E7EUB6 86 aa12.02□□□□□ -0.49
VPS39-203ENST00000561797 TRBV12-3P01733 135 aa12.02□□□□□ -0.49
VPS39-203ENST00000561797 IL6RP08887 468 aaPredicted RBP12.02□□□□□ -0.49
VPS39-203ENST00000561797 HRH1P35367 487 aa12.02□□□□□ -0.49
VPS39-203ENST00000561797 MAS1LP35410 378 aa12.02□□□□□ -0.49
VPS39-203ENST00000561797 ZNF45Q02386 682 aa12.02□□□□□ -0.49
VPS39-203ENST00000561797 RNASE12Q5GAN4 147 aaKnown RBP12.02□□□□□ -0.49
VPS39-203ENST00000561797 OR4A47Q6IF82 309 aa12.02□□□□□ -0.49
VPS39-203ENST00000561797 ZNF343Q6P1L6 599 aa12.02□□□□□ -0.49
VPS39-203ENST00000561797 GPR141Q7Z602 305 aa12.02□□□□□ -0.49
VPS39-203ENST00000561797 OR6F1Q8NGZ6 308 aa12.02□□□□□ -0.49
VPS39-203ENST00000561797 BORCS5Q969J3 196 aa12.02□□□□□ -0.49
VPS39-203ENST00000561797 B9D2Q9BPU9 175 aa12.02□□□□□ -0.49
VPS39-203ENST00000561797 AIFM2Q9BRQ8 373 aa12.02□□□□□ -0.49
VPS39-203ENST00000561797 ELOVL1Q9BW60 279 aa12.02□□□□□ -0.49
VPS39-203ENST00000561797 LSM4Q9Y4Z0 139 aaKnown RBP12.02□□□□□ -0.49
VPS39-203ENST00000561797 TEX22C9J3V5 150 aa12.01□□□□□ -0.49
VPS39-203ENST00000561797 RBFOX2O43251 390 aaKnown RBP eCLIP12.01□□□□□ -0.49
VPS39-203ENST00000561797 PGLYRP1O75594 196 aaPredicted RBP12.01□□□□□ -0.49
VPS39-203ENST00000561797 S1PR2O95136 353 aa12.01□□□□□ -0.49
VPS39-203ENST00000561797 HPRT1P00492 218 aa12.01□□□□□ -0.49
VPS39-203ENST00000561797 RLN1P04808 185 aa12.01□□□□□ -0.49
VPS39-203ENST00000561797 RPA2P15927 270 aa12.01□□□□□ -0.49
VPS39-203ENST00000561797 SPNP16150 400 aa12.01□□□□□ -0.49
VPS39-203ENST00000561797 ZNF182P17025 639 aaPredicted RBP12.01□□□□□ -0.49
VPS39-203ENST00000561797 TSPAN5P62079 268 aa12.01□□□□□ -0.49
VPS39-203ENST00000561797 RPL8P62917 257 aaKnown RBP12.01□□□□□ -0.49
VPS39-203ENST00000561797 ATP5G2Q06055 141 aa12.01□□□□□ -0.49
VPS39-203ENST00000561797 C11orf87Q6NUJ2 197 aa12.01□□□□□ -0.49
VPS39-203ENST00000561797 C19orf35Q6ZS72 473 aa12.01□□□□□ -0.49
VPS39-203ENST00000561797 HAPLN4Q86UW8 402 aa12.01□□□□□ -0.49
VPS39-203ENST00000561797 SLC25A42Q86VD7 318 aa12.01□□□□□ -0.49
VPS39-203ENST00000561797 DMBX1Q8NFW5 382 aa12.01□□□□□ -0.49
VPS39-203ENST00000561797 RSRP1Q9BUV0 290 aa12.01□□□□□ -0.49
VPS39-203ENST00000561797 FXYD6Q9H0Q3 95 aa12.01□□□□□ -0.49
VPS39-203ENST00000561797 SCPEP1Q9HB40 452 aa12.01□□□□□ -0.49
VPS39-203ENST00000561797 BET1LQ9NYM9 111 aa12.01□□□□□ -0.49
VPS39-203ENST00000561797 ADAM30Q9UKF2 790 aa12.01□□□□□ -0.49
VPS39-203ENST00000561797 TRBV9A0A0B4J1U6 114 aa12□□□□□ -0.49
VPS39-203ENST00000561797 TRAV3A0A0B4J244 114 aa12□□□□□ -0.49
VPS39-203ENST00000561797 A0A1B0GW64 132 aa12□□□□□ -0.49
VPS39-203ENST00000561797 FAM223BA6NKX1 122 aa12□□□□□ -0.49
VPS39-203ENST00000561797 OR2J3O76001 311 aa12□□□□□ -0.49
VPS39-203ENST00000561797 ZNF735P0CB33 412 aa12□□□□□ -0.49
VPS39-203ENST00000561797 AREGP15514 252 aa12□□□□□ -0.49
VPS39-203ENST00000561797 NQO2P16083 231 aa12□□□□□ -0.49
VPS39-203ENST00000561797 HLA-GP17693 338 aa12□□□□□ -0.49
VPS39-203ENST00000561797 ALDH3B2P48448 385 aa12□□□□□ -0.49
VPS39-203ENST00000561797 SYNJ2BPP57105 145 aa12□□□□□ -0.49
VPS39-203ENST00000561797 TAS2R31P59538 309 aa12□□□□□ -0.49
VPS39-203ENST00000561797 EXOSC2Q13868 293 aaKnown RBP12□□□□□ -0.49
VPS39-203ENST00000561797 KLF5Q13887 457 aaPredicted RBP12□□□□□ -0.49
VPS39-203ENST00000561797 RPEL1Q2QD12 228 aa12□□□□□ -0.49
VPS39-203ENST00000561797 FAM223AQ8IWN6 122 aa12□□□□□ -0.49
VPS39-203ENST00000561797 OR6Q1Q8NGQ2 317 aa12□□□□□ -0.49
VPS39-203ENST00000561797 OR4A5Q8NH83 315 aa12□□□□□ -0.49
VPS39-203ENST00000561797 AP3S1Q92572 193 aa12□□□□□ -0.49
VPS39-203ENST00000561797 SLC2A9Q9NRM0 540 aa12□□□□□ -0.49
VPS39-203ENST00000561797 ZNF257Q9Y2Q1 563 aa12□□□□□ -0.49
VPS39-203ENST00000561797 GPR31O00270 319 aa11.99□□□□□ -0.49
VPS39-203ENST00000561797 UPK2O00526 184 aa11.99□□□□□ -0.49
VPS39-203ENST00000561797 REG1AP05451 166 aa11.99□□□□□ -0.49
VPS39-203ENST00000561797 RCVRNP35243 200 aa11.99□□□□□ -0.49
VPS39-203ENST00000561797 NECAP1Q8NC96 275 aa11.99□□□□□ -0.49
VPS39-203ENST00000561797 CD300LFQ8TDQ1 290 aa11.99□□□□□ -0.49
VPS39-203ENST00000561797 PLEKHA2Q9HB19 425 aa11.99□□□□□ -0.49
VPS39-203ENST00000561797 TMEM140Q9NV12 185 aa11.99□□□□□ -0.49
VPS39-203ENST00000561797 EXTL2Q9UBQ6 330 aa11.99□□□□□ -0.49
VPS39-203ENST00000561797 FBXL7Q9UJT9 491 aa11.99□□□□□ -0.49
VPS39-203ENST00000561797 CGB1A6NKQ9 187 aa11.98□□□□□ -0.49
VPS39-203ENST00000561797 NPIPB5A8MRT5 1133 aa11.98□□□□□ -0.49
VPS39-203ENST00000561797 M0QYG6 137 aa11.98□□□□□ -0.49
VPS39-203ENST00000561797 GP9P14770 177 aa11.98□□□□□ -0.49
VPS39-203ENST00000561797 F2RP25116 425 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms