RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 ZNF818PQ6ZRF7 136 aa13.47□□□□□ -0.25
HDDC3-205ENST00000559898 OR4S2Q8NH73 311 aa13.47□□□□□ -0.25
HDDC3-205ENST00000559898 FANCD2OSQ96PS1 177 aa13.47□□□□□ -0.25
HDDC3-205ENST00000559898 OR2A7Q96R45 310 aa13.47□□□□□ -0.25
HDDC3-205ENST00000559898 HSD17B10Q99714 261 aaKnown RBP13.47□□□□□ -0.25
HDDC3-205ENST00000559898 DYNC2H1Q8NCM8 4307 aaKnown RBP13.47□□□□□ -0.25
HDDC3-205ENST00000559898 NDUFB8O95169 186 aa13.46□□□□□ -0.25
HDDC3-205ENST00000559898 RPA2P15927 270 aa13.46□□□□□ -0.25
HDDC3-205ENST00000559898 RPL27AP46776 148 aaKnown RBP13.46□□□□□ -0.25
HDDC3-205ENST00000559898 SCAND1P57086 179 aa13.46□□□□□ -0.25
HDDC3-205ENST00000559898 ATP5G2Q06055 141 aa13.46□□□□□ -0.25
HDDC3-205ENST00000559898 RPEL1Q2QD12 228 aa13.46□□□□□ -0.25
HDDC3-205ENST00000559898 SLC5A7Q9GZV3 580 aa13.46□□□□□ -0.25
HDDC3-205ENST00000559898 MRPS7Q9Y2R9 242 aaKnown RBP13.46□□□□□ -0.25
HDDC3-205ENST00000559898 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.45□□□□□ -0.26
HDDC3-205ENST00000559898 AIREO43918 545 aa13.45□□□□□ -0.26
HDDC3-205ENST00000559898 SLC22A5O76082 557 aa13.45□□□□□ -0.26
HDDC3-205ENST00000559898 ZNF735P0CB33 412 aa13.45□□□□□ -0.26
HDDC3-205ENST00000559898 RFX2P48378 723 aa13.45□□□□□ -0.26
HDDC3-205ENST00000559898 MECP2P51608 486 aaKnown RBP13.45□□□□□ -0.26
HDDC3-205ENST00000559898 C15orf32Q32M92 178 aa13.45□□□□□ -0.26
HDDC3-205ENST00000559898 OR4A47Q6IF82 309 aa13.45□□□□□ -0.26
HDDC3-205ENST00000559898 ZNF66Q6ZN08 573 aa13.45□□□□□ -0.26
HDDC3-205ENST00000559898 TMEM17Q86X19 198 aa13.45□□□□□ -0.26
HDDC3-205ENST00000559898 SPAG16Q8N0X2 631 aa13.45□□□□□ -0.26
HDDC3-205ENST00000559898 SPIN2AQ99865 258 aa13.45□□□□□ -0.26
HDDC3-205ENST00000559898 SPIN2BQ9BPZ2 258 aa13.45□□□□□ -0.26
HDDC3-205ENST00000559898 DIABLOQ9NR28 239 aa13.45□□□□□ -0.26
HDDC3-205ENST00000559898 C19orf73Q9NVV2 129 aa13.45□□□□□ -0.26
HDDC3-205ENST00000559898 XRCC3O43542 346 aa13.44□□□□□ -0.26
HDDC3-205ENST00000559898 ACTL6BO94805 426 aa13.44□□□□□ -0.26
HDDC3-205ENST00000559898 PMP2P02689 132 aa13.44□□□□□ -0.26
HDDC3-205ENST00000559898 TAS2R20P59543 309 aa13.44□□□□□ -0.26
HDDC3-205ENST00000559898 TIMM50Q3ZCQ8 353 aa13.44□□□□□ -0.26
HDDC3-205ENST00000559898 TSPAN14Q8NG11 270 aa13.44□□□□□ -0.26
HDDC3-205ENST00000559898 OR5AP2Q8NGF4 316 aa13.44□□□□□ -0.26
HDDC3-205ENST00000559898 OR51H1Q8NH63 302 aa13.44□□□□□ -0.26
HDDC3-205ENST00000559898 CCDC140Q96MF4 163 aa13.44□□□□□ -0.26
HDDC3-205ENST00000559898 GAR1Q9NY12 217 aaKnown RBP13.44□□□□□ -0.26
HDDC3-205ENST00000559898 A0A0A6YYH2 397 aa13.43□□□□□ -0.26
HDDC3-205ENST00000559898 A6NJ64 397 aa13.43□□□□□ -0.26
HDDC3-205ENST00000559898 FAM223BA6NKX1 122 aa13.43□□□□□ -0.26
HDDC3-205ENST00000559898 S1PR2O95136 353 aa13.43□□□□□ -0.26
HDDC3-205ENST00000559898 OR2C1O95371 312 aa13.43□□□□□ -0.26
HDDC3-205ENST00000559898 EIF4EP06730 217 aaKnown RBP13.43□□□□□ -0.26
HDDC3-205ENST00000559898 GNRHRP30968 328 aa13.43□□□□□ -0.26
HDDC3-205ENST00000559898 NCS1P62166 190 aa13.43□□□□□ -0.26
HDDC3-205ENST00000559898 FAM223AQ8IWN6 122 aa13.43□□□□□ -0.26
HDDC3-205ENST00000559898 SAMD12Q8N8I0 201 aa13.43□□□□□ -0.26
HDDC3-205ENST00000559898 CACNG8Q8WXS5 425 aa13.43□□□□□ -0.26
HDDC3-205ENST00000559898 SLC2A9Q9NRM0 540 aa13.43□□□□□ -0.26
HDDC3-205ENST00000559898 FBXL7Q9UJT9 491 aa13.43□□□□□ -0.26
HDDC3-205ENST00000559898 ANAPC10Q9UM13 185 aa13.43□□□□□ -0.26
HDDC3-205ENST00000559898 NPIPB5A8MRT5 1133 aa13.42□□□□□ -0.26
HDDC3-205ENST00000559898 CTRB1P17538 263 aa13.42□□□□□ -0.26
HDDC3-205ENST00000559898 PSMB6P28072 239 aa13.42□□□□□ -0.26
HDDC3-205ENST00000559898 UBE2NLQ5JXB2 153 aa13.42□□□□□ -0.26
HDDC3-205ENST00000559898 CTRB2Q6GPI1 263 aa13.42□□□□□ -0.26
HDDC3-205ENST00000559898 NECAP1Q8NC96 275 aa13.42□□□□□ -0.26
HDDC3-205ENST00000559898 GIMAP1Q8WWP7 306 aa13.42□□□□□ -0.26
HDDC3-205ENST00000559898 TM2D3Q9BRN9 247 aa13.42□□□□□ -0.26
HDDC3-205ENST00000559898 FXYD6Q9H0Q3 95 aa13.42□□□□□ -0.26
HDDC3-205ENST00000559898 WFDC10AQ9H1F0 79 aa13.42□□□□□ -0.26
HDDC3-205ENST00000559898 ZC4H2Q9NQZ6 224 aa13.42□□□□□ -0.26
HDDC3-205ENST00000559898 EHFQ9NZC4 300 aa13.42□□□□□ -0.26
HDDC3-205ENST00000559898 ZNF257Q9Y2Q1 563 aa13.42□□□□□ -0.26
HDDC3-205ENST00000559898 CSMD3Q7Z407 3707 aa13.42□□□□□ -0.26
HDDC3-205ENST00000559898 STARD9Q9P2P6 4700 aa13.41□□□□□ -0.26
HDDC3-205ENST00000559898 MFSD2BA6NFX1 497 aa13.41□□□□□ -0.26
HDDC3-205ENST00000559898 CRYGCP07315 174 aa13.41□□□□□ -0.26
HDDC3-205ENST00000559898 HLA-GP17693 338 aa13.41□□□□□ -0.26
HDDC3-205ENST00000559898 OR2B8PP59922 312 aa13.41□□□□□ -0.26
HDDC3-205ENST00000559898 RPL8P62917 257 aaKnown RBP13.41□□□□□ -0.26
HDDC3-205ENST00000559898 CD300EQ496F6 205 aaPredicted RBP13.41□□□□□ -0.26
HDDC3-205ENST00000559898 CLEC19AQ6UXS0 136 aa13.41□□□□□ -0.26
HDDC3-205ENST00000559898 LYSMD2Q8IV50 215 aa13.41□□□□□ -0.26
HDDC3-205ENST00000559898 OR10W1Q8NGF6 305 aa13.41□□□□□ -0.26
HDDC3-205ENST00000559898 NAA50Q9GZZ1 169 aaKnown RBP13.41□□□□□ -0.26
HDDC3-205ENST00000559898 HRASLSQ9HDD0 168 aa13.41□□□□□ -0.26
HDDC3-205ENST00000559898 IFT46Q9NQC8 304 aa13.41□□□□□ -0.26
HDDC3-205ENST00000559898 BET1LQ9NYM9 111 aa13.41□□□□□ -0.26
HDDC3-205ENST00000559898 A0A087WXM4 84 aa13.4□□□□□ -0.26
HDDC3-205ENST00000559898 ZNF785A8K8V0 405 aa13.4□□□□□ -0.26
HDDC3-205ENST00000559898 UPK2O00526 184 aa13.4□□□□□ -0.26
HDDC3-205ENST00000559898 CREBL2O60519 120 aaPredicted RBP13.4□□□□□ -0.26
HDDC3-205ENST00000559898 HRASP01112 189 aa13.4□□□□□ -0.26
HDDC3-205ENST00000559898 KIR2DS2P43631 304 aa13.4□□□□□ -0.26
HDDC3-205ENST00000559898 VBP1P61758 197 aa13.4□□□□□ -0.26
HDDC3-205ENST00000559898 MSMO1Q15800 293 aa13.4□□□□□ -0.26
HDDC3-205ENST00000559898 TMEM69Q5SWH9 247 aa13.4□□□□□ -0.26
HDDC3-205ENST00000559898 VSTM2AQ8TAG5 236 aa13.4□□□□□ -0.26
HDDC3-205ENST00000559898 S100A16Q96FQ6 103 aaKnown RBP13.4□□□□□ -0.26
HDDC3-205ENST00000559898 ZNF2Q9BSG1 426 aaPredicted RBP13.4□□□□□ -0.26
HDDC3-205ENST00000559898 FUNDC2Q9BWH2 189 aa13.4□□□□□ -0.26
HDDC3-205ENST00000559898 RETNQ9HD89 108 aa13.4□□□□□ -0.26
HDDC3-205ENST00000559898 SIGLEC8Q9NYZ4 499 aa13.4□□□□□ -0.26
HDDC3-205ENST00000559898 IGLV11-55A0A075B6I3 123 aa13.39□□□□□ -0.27
HDDC3-205ENST00000559898 IGLC7A0M8Q6 106 aa13.39□□□□□ -0.27
HDDC3-205ENST00000559898 DPPA5A6NC42 116 aa13.39□□□□□ -0.27
HDDC3-205ENST00000559898 A8MZ25 164 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms