RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 C1orf229Q6ZS94 237 aaPredicted RBP14.54□□□□□ -0.08
SNX1-208ENST00000559844 PINX1Q96BK5 328 aaKnown RBP14.54□□□□□ -0.08
SNX1-208ENST00000559844 TMA7Q9Y2S6 64 aaKnown RBP14.54□□□□□ -0.08
SNX1-208ENST00000559844 DVL1O14640 695 aa14.54□□□□□ -0.08
SNX1-208ENST00000559844 IFNA17P01571 189 aa14.54□□□□□ -0.08
SNX1-208ENST00000559844 RAB2AP61019 212 aa14.54□□□□□ -0.08
SNX1-208ENST00000559844 BTN1A1Q13410 526 aa14.54□□□□□ -0.08
SNX1-208ENST00000559844 GUK1Q16774 197 aa14.54□□□□□ -0.08
SNX1-208ENST00000559844 PDLIM3Q53GG5 364 aaPredicted RBP14.54□□□□□ -0.08
SNX1-208ENST00000559844 ZNF383Q8NA42 475 aa14.54□□□□□ -0.08
SNX1-208ENST00000559844 OR10P1Q8NGE3 313 aa14.54□□□□□ -0.08
SNX1-208ENST00000559844 ZDHHC16Q969W1 377 aa14.54□□□□□ -0.08
SNX1-208ENST00000559844 NKX6-2Q9C056 277 aaPredicted RBP14.54□□□□□ -0.08
SNX1-208ENST00000559844 WDR61Q9GZS3 305 aaKnown RBP14.54□□□□□ -0.08
SNX1-208ENST00000559844 HIPK2Q9H2X6 1198 aa14.54□□□□□ -0.08
SNX1-208ENST00000559844 TMEM140Q9NV12 185 aa14.54□□□□□ -0.08
SNX1-208ENST00000559844 A0A1B0GW64 132 aa14.53□□□□□ -0.08
SNX1-208ENST00000559844 HRASP01112 189 aa14.53□□□□□ -0.08
SNX1-208ENST00000559844 H2AFB1P0C5Y9 115 aa14.53□□□□□ -0.08
SNX1-208ENST00000559844 SFTA3P0C7M3 94 aa14.53□□□□□ -0.08
SNX1-208ENST00000559844 SERF2P84101 59 aa14.53□□□□□ -0.08
SNX1-208ENST00000559844 DHRS7BQ6IAN0 325 aaPredicted RBP14.53□□□□□ -0.08
SNX1-208ENST00000559844 OR8G2PQ6IF36 304 aa14.53□□□□□ -0.08
SNX1-208ENST00000559844 SSX9Q7RTT3 188 aa14.53□□□□□ -0.08
SNX1-208ENST00000559844 TMEM147Q9BVK8 224 aa14.53□□□□□ -0.08
SNX1-208ENST00000559844 CTSZQ9UBR2 303 aa14.53□□□□□ -0.08
SNX1-208ENST00000559844 RFNGQ9Y644 331 aa14.53□□□□□ -0.08
SNX1-208ENST00000559844 NOTCH2Q04721 2471 aa14.53□□□□□ -0.08
SNX1-208ENST00000559844 FCN3O75636 299 aa14.53□□□□□ -0.08
SNX1-208ENST00000559844 HBE1P02100 147 aa14.53□□□□□ -0.08
SNX1-208ENST00000559844 OR2B8PP59922 312 aa14.53□□□□□ -0.08
SNX1-208ENST00000559844 RELBQ01201 579 aa14.53□□□□□ -0.08
SNX1-208ENST00000559844 ZNF429Q86V71 674 aa14.53□□□□□ -0.08
SNX1-208ENST00000559844 CHODLQ9H9P2 273 aa14.53□□□□□ -0.08
SNX1-208ENST00000559844 FBXO7Q9Y3I1 522 aa14.53□□□□□ -0.08
SNX1-208ENST00000559844 TIMM9Q9Y5J7 89 aa14.53□□□□□ -0.08
SNX1-208ENST00000559844 CCDC168Q8NDH2 2452 aa14.52□□□□□ -0.09
SNX1-208ENST00000559844 PMS2P5A8MQ11 134 aa14.52□□□□□ -0.09
SNX1-208ENST00000559844 SNAPINO95295 136 aa14.52□□□□□ -0.09
SNX1-208ENST00000559844 CCL3L1P16619 93 aa14.52□□□□□ -0.09
SNX1-208ENST00000559844 GNB2P62879 340 aa14.52□□□□□ -0.09
SNX1-208ENST00000559844 POU2AF1Q16633 256 aa14.52□□□□□ -0.09
SNX1-208ENST00000559844 RTL8BQ17RB0 113 aa14.52□□□□□ -0.09
SNX1-208ENST00000559844 ATRAIDQ6UW56 229 aa14.52□□□□□ -0.09
SNX1-208ENST00000559844 LRRC75A-AS1Q8N1F1 130 aa14.52□□□□□ -0.09
SNX1-208ENST00000559844 C8orf31Q8N9H6 132 aa14.52□□□□□ -0.09
SNX1-208ENST00000559844 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.52□□□□□ -0.09
SNX1-208ENST00000559844 EIF5A2Q9GZV4 153 aaKnown RBP14.52□□□□□ -0.09
SNX1-208ENST00000559844 SMDT1Q9H4I9 107 aa14.52□□□□□ -0.09
SNX1-208ENST00000559844 TRBV23-1A0A0A0MS06 115 aa14.51□□□□□ -0.09
SNX1-208ENST00000559844 TAGLNQ01995 201 aaKnown RBP14.51□□□□□ -0.09
SNX1-208ENST00000559844 ZNF833PQ6ZTB9 187 aa14.51□□□□□ -0.09
SNX1-208ENST00000559844 TAF15Q92804 592 aaKnown RBP eCLIP14.51□□□□□ -0.09
SNX1-208ENST00000559844 AIFM2Q9BRQ8 373 aa14.51□□□□□ -0.09
SNX1-208ENST00000559844 KPTNQ9Y664 436 aa14.51□□□□□ -0.09
SNX1-208ENST00000559844 CSMD1Q96PZ7 3565 aa14.51□□□□□ -0.09
SNX1-208ENST00000559844 UBE2L5PA0A1B0GUS4 154 aa14.51□□□□□ -0.09
SNX1-208ENST00000559844 FAM157AC9JC47 383 aa14.51□□□□□ -0.09
SNX1-208ENST00000559844 FAM71F2Q6NXP2 309 aa14.51□□□□□ -0.09
SNX1-208ENST00000559844 PUSL1Q8N0Z8 303 aaKnown RBP14.51□□□□□ -0.09
SNX1-208ENST00000559844 RSG1Q9BU20 258 aa14.51□□□□□ -0.09
SNX1-208ENST00000559844 SLC35D1Q9NTN3 355 aa14.51□□□□□ -0.09
SNX1-208ENST00000559844 CT45A6P0DMU7 189 aa14.5□□□□□ -0.09
SNX1-208ENST00000559844 CT45A5P0DMU8 189 aa14.5□□□□□ -0.09
SNX1-208ENST00000559844 CT45A7P0DMV0 189 aa14.5□□□□□ -0.09
SNX1-208ENST00000559844 PDLIM4P50479 330 aa14.5□□□□□ -0.09
SNX1-208ENST00000559844 GUCA2BQ16661 112 aa14.5□□□□□ -0.09
SNX1-208ENST00000559844 SPSB3Q6PJ21 355 aa14.5□□□□□ -0.09
SNX1-208ENST00000559844 VKORC1L1Q8N0U8 176 aa14.5□□□□□ -0.09
SNX1-208ENST00000559844 LINC00311Q8N616 119 aa14.5□□□□□ -0.09
SNX1-208ENST00000559844 ZNF596Q8TC21 504 aa14.5□□□□□ -0.09
SNX1-208ENST00000559844 RHOVQ96L33 236 aa14.5□□□□□ -0.09
SNX1-208ENST00000559844 SCRT1Q9BWW7 348 aa14.5□□□□□ -0.09
SNX1-208ENST00000559844 C15orf61A6NNL5 157 aa14.49□□□□□ -0.09
SNX1-208ENST00000559844 ARG1P05089 322 aa14.49□□□□□ -0.09
SNX1-208ENST00000559844 VWC2Q2TAL6 325 aa14.49□□□□□ -0.09
SNX1-208ENST00000559844 TMEM155Q4W5P6 130 aa14.49□□□□□ -0.09
SNX1-208ENST00000559844 SPINK9Q5DT21 86 aa14.49□□□□□ -0.09
SNX1-208ENST00000559844 CLEC2AQ6UVW9 174 aa14.49□□□□□ -0.09
SNX1-208ENST00000559844 CENPVQ7Z7K6 275 aaPredicted RBP14.49□□□□□ -0.09
SNX1-208ENST00000559844 FAM168AQ92567 244 aa14.49□□□□□ -0.09
SNX1-208ENST00000559844 RBMXL1Q96E39 390 aaKnown RBP14.49□□□□□ -0.09
SNX1-208ENST00000559844 KIAA1456Q9P272 454 aa14.49□□□□□ -0.09
SNX1-208ENST00000559844 FOXA2Q9Y261 457 aaPredicted RBP14.49□□□□□ -0.09
SNX1-208ENST00000559844 MAP1AP78559 2803 aaPredicted RBP14.49□□□□□ -0.09
SNX1-208ENST00000559844 TRAV1-1A0A0B4J248 108 aa14.49□□□□□ -0.09
SNX1-208ENST00000559844 DLX6P56179 175 aa14.49□□□□□ -0.09
SNX1-208ENST00000559844 Q5PR19 223 aa14.49□□□□□ -0.09
SNX1-208ENST00000559844 OR4A47Q6IF82 309 aa14.49□□□□□ -0.09
SNX1-208ENST00000559844 SETXQ7Z333 2677 aaKnown RBP14.49□□□□□ -0.09
SNX1-208ENST00000559844 PRRC2AP48634 2157 aaKnown RBP14.48□□□□□ -0.09
SNX1-208ENST00000559844 A0A087X0M5 115 aa14.48□□□□□ -0.09
SNX1-208ENST00000559844 A0A1B0GX30 115 aa14.48□□□□□ -0.09
SNX1-208ENST00000559844 C15orf62A8K5M9 175 aa14.48□□□□□ -0.09
SNX1-208ENST00000559844 C9JQL5 133 aa14.48□□□□□ -0.09
SNX1-208ENST00000559844 GPR37O15354 613 aa14.48□□□□□ -0.09
SNX1-208ENST00000559844 APOA2P02652 100 aa14.48□□□□□ -0.09
SNX1-208ENST00000559844 VDAC2P45880 294 aaPredicted RBP14.48□□□□□ -0.09
SNX1-208ENST00000559844 TMEM41BQ5BJD5 291 aa14.48□□□□□ -0.09
SNX1-208ENST00000559844 AVPI1Q5T686 147 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms