RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 CYP2G1PQ6ZSU1 146 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 ZNF826PQ6ZT77 177 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 TMEM178AQ8NBL3 297 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 OR13C6PQ8NH95 151 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 SLC25A40Q8TBP6 338 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 LSM10Q969L4 123 aaKnown RBP6.05□□□□□ -1.44
USP3-210ENST00000559192 QTRT1Q9BXR0 403 aaKnown RBP6.05□□□□□ -1.44
USP3-210ENST00000559192 NPCDR1Q9BY65 106 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 MDC1Q14676 2089 aaKnown RBP6.05□□□□□ -1.44
USP3-210ENST00000559192 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.05□□□□□ -1.44
USP3-210ENST00000559192 SRIP30626 198 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 TWIST1Q15672 202 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 PQLC2Q6ZP29 291 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 SPEM1Q8N4L4 309 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 CT55Q8WUE5 264 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 TMEM170AQ8WVE7 144 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 ST6GALNAC6Q969X2 333 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 FER1L6-AS2Q96M78 137 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 CFHR5Q9BXR6 569 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 DENND4CQ5VZ89 1909 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 ALPK3Q96L96 1907 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 ZIC3O60481 467 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 LINC00614P0C842 121 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 NUTF2P61970 127 aaKnown RBP6.04□□□□□ -1.44
USP3-210ENST00000559192 TEPPQ6URK8 271 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 WDYHV1Q96HA8 205 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 UBE2ZQ9H832 354 aaPredicted RBP6.04□□□□□ -1.44
USP3-210ENST00000559192 DECR2Q9NUI1 292 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 SPAG17Q6Q759 2223 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 A0A0G2JMM0 328 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 SCO2A0A1W2PP80 73 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 A0A1W2PPB8 328 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 A0A1W2PRS3 328 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 FAM90A10PA6NDY2 464 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 FAM90A18PA6NE21 464 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 FAM90A16PA6NEW6 464 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 FAM90A20PA6NIJ5 464 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 PRR19A6NJB7 356 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 FAM90A8PA6NJQ4 464 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 FAM90A7PA6NKC0 464 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 FAM90A22PA8MWA6 464 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 KIR3DP1A8MWS1 328 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 FAM90A12PA8MX19 464 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 FAM90A5PA8MXJ8 464 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 FAM90A23PA8MXZ1 464 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 PRSS2P07478 247 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 FAM90A15PP0C7V4 464 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 FAM90A13PP0C7W8 464 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 FAM90A14PP0C7W9 464 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 FAM90A24PP0C7X0 464 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 C1QTNF9P0C862 333 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 TFPI2P48307 235 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 MEF2CQ06413 473 aaPredicted RBP6.04□□□□□ -1.44
USP3-210ENST00000559192 ZNF441Q8N8Z8 693 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 CPEB3Q8NE35 698 aaKnown RBP6.04□□□□□ -1.44
USP3-210ENST00000559192 OR10AG1Q8NH19 301 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 CXXC4Q9H2H0 198 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 FNDC4Q9H6D8 234 aaPredicted RBP6.04□□□□□ -1.44
USP3-210ENST00000559192 GDF9O60383 454 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 IGHV2-5P01817 119 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 ORM2P19652 201 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 BEND2Q8NDZ0 799 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 COL4A4P53420 1690 aaPredicted RBP6.04□□□□□ -1.44
USP3-210ENST00000559192 ZNF106Q9H2Y7 1883 aaKnown RBP6.04□□□□□ -1.44
USP3-210ENST00000559192 TRGV10A0A0A0MS01 117 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 MARCH11A6NNE9 402 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 SNAI2O43623 268 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 SPEM2Q0P670 501 aa6.04□□□□□ -1.44
USP3-210ENST00000559192 TRGV5A0A0B4J1U4 118 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 A0A1B0GW64 132 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 OR1B1Q8NGR6 318 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 TCFL5Q9UL49 500 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 LRRC30A6NM36 301 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 EREGO14944 169 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 RFPL3SP0C7P2 107 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 PCOLCEQ15113 449 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 TM4SF20Q53R12 229 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 ZNF664Q8N3J9 261 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 OR4C13Q8NGP0 309 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 OR4S2Q8NH73 311 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 HES7Q9BYE0 225 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 C7orf71A4D174 169 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 FREM3P0C091 2139 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 COX6A1P12074 109 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 NUBP1P53384 320 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 ZFAND6Q6FIF0 208 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 SPSB3Q6PJ21 355 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 OR5A1Q8NGJ0 315 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 OR51G1Q8NGK1 321 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 FGFBP3Q8TAT2 258 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 GTF3AQ92664 365 aaKnown RBP6.03□□□□□ -1.44
USP3-210ENST00000559192 C5orf30Q96GV9 206 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 OR8B2Q96RD0 313 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 PLSCR2Q9NRY7 297 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 TMSB15BA0A087X1C1 80 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 RBFOX2O43251 390 aaKnown RBP eCLIP6.03□□□□□ -1.449e-6■□□□□ 10.4
USP3-210ENST00000559192 MGPP08493 103 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 APELAP0DMC3 54 aa6.03□□□□□ -1.44
USP3-210ENST00000559192 KIR2DS2P43631 304 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms