RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 CDC34P49427 236 aaPredicted RBP2.03□□□□□ -2.08
VPS13C-208ENST00000559119 FGF8P55075 233 aaPredicted RBP2.03□□□□□ -2.08
VPS13C-208ENST00000559119 OR12D2P58182 307 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 RAB11AP62491 216 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 HLA-DRB3P79483 266 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 IRF8Q02556 426 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 ZNF763Q0D2J5 394 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 PPP1R1AQ13522 171 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 TMEM183BQ1AE95 376 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 SMIM21Q3B7S5 101 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 Q499Y3 187 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 LINC01620Q4KN68 170 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 TRMT12Q53H54 448 aaKnown RBP2.03□□□□□ -2.08
VPS13C-208ENST00000559119 OCIAD2Q56VL3 154 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 TMEM128Q5BJH2 165 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 C10orf120Q5SQS8 335 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 AADACL3Q5VUY0 350 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 RPL7L1Q6DKI1 246 aaKnown RBP2.03□□□□□ -2.08
VPS13C-208ENST00000559119 CLEC18BQ6UXF7 455 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 DPPA3Q6W0C5 159 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 ZNF705AQ6ZN79 300 aaPredicted RBP2.03□□□□□ -2.08
VPS13C-208ENST00000559119 MBOAT2Q6ZWT7 520 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 GLT6D1Q7Z4J2 308 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 TMCO2Q7Z6W1 182 aaPredicted RBP2.03□□□□□ -2.08
VPS13C-208ENST00000559119 MOB3BQ86TA1 216 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 TMEM150AQ86TG1 271 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 PIANPQ8IYJ0 282 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 ZNF679Q8IYX0 411 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 TMEM86AQ8N2M4 240 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 OR2L13Q8N349 312 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 PNKDQ8N490 385 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 APCDD1LQ8NCL9 501 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 BHLHE23Q8NDY6 225 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 OR4B1Q8NGF8 309 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 OR4D11Q8NGI4 311 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 OR4D5Q8NGN0 318 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 OR6K2Q8NGY2 324 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 OR5B3Q8NH48 314 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 UBALD1Q8TB05 177 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 ACER1Q8TDN7 264 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 CD300LFQ8TDQ1 290 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 C2orf15Q8WU43 125 aaKnown RBP2.03□□□□□ -2.08
VPS13C-208ENST00000559119 TMEM234Q8WY98 164 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 C11orf40Q8WZ69 217 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 OR5P2Q8WZ92 322 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 AQP3Q92482 292 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 GPR146Q96CH1 333 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 DDIT4LQ96D03 193 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 RASD2Q96D21 266 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 RMI2Q96E14 147 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 RBMXL1Q96E39 390 aaKnown RBP2.03□□□□□ -2.08
VPS13C-208ENST00000559119 WDR34Q96EX3 536 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 PELI1Q96FA3 418 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 SEC22AQ96IW7 307 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 C2orf50Q96LR7 162 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 JSRP1Q96MG2 331 aaPredicted RBP2.03□□□□□ -2.08
VPS13C-208ENST00000559119 PRAP1Q96NZ9 151 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 DERL3Q96Q80 235 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 OR8B4Q96RC9 309 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 LYSMD1Q96S90 227 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 P2RX4Q99571 388 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 VPS25Q9BRG1 176 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 NIPSNAP3BQ9BS92 247 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 EIF5A2Q9GZV4 153 aaKnown RBP2.03□□□□□ -2.08
VPS13C-208ENST00000559119 CXCL16Q9H2A7 254 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 TCEAL2Q9H3H9 227 aaPredicted RBP2.03□□□□□ -2.08
VPS13C-208ENST00000559119 CST9LQ9H4G1 147 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 SLC25A22Q9H936 323 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 SGK2Q9HBY8 427 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 GSKIPQ9P0R6 139 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 GNG12Q9UBI6 72 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 CHRNA9Q9UGM1 479 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 CD84Q9UIB8 345 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 ANAPC10Q9UM13 185 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 NPIPA1Q9UND3 350 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 FUT9Q9Y231 359 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 SIGLEC7Q9Y286 467 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 MRPS16Q9Y3D3 137 aaKnown RBP2.03□□□□□ -2.08
VPS13C-208ENST00000559119 AK6Q9Y3D8 172 aaKnown RBP2.03□□□□□ -2.08
VPS13C-208ENST00000559119 TRIP11Q15643 1979 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 LRP4O75096 1905 aa2.03□□□□□ -2.08
VPS13C-208ENST00000559119 ZSWIM8A7E2V4 1837 aa2.03□□□□□ -2.09
VPS13C-208ENST00000559119 ZNF236Q9UL36 1845 aa2.03□□□□□ -2.09
VPS13C-208ENST00000559119 LOC285556D6RIA3 1793 aa2.03□□□□□ -2.09
VPS13C-208ENST00000559119 MYO18AQ92614 2054 aaKnown RBP2.02□□□□□ -2.09
VPS13C-208ENST00000559119 YLPM1P49750 1951 aaKnown RBP2.02□□□□□ -2.09
VPS13C-208ENST00000559119 MIA3Q5JRA6 1907 aa2.02□□□□□ -2.09
VPS13C-208ENST00000559119 A0A0G2JN53 185 aa2.02□□□□□ -2.09
VPS13C-208ENST00000559119 A0A1B0GV72 72 aa2.02□□□□□ -2.09
VPS13C-208ENST00000559119 SERTM2A0A1B0GWG4 89 aa2.02□□□□□ -2.09
VPS13C-208ENST00000559119 TSPAN11A1L157 253 aa2.02□□□□□ -2.09
VPS13C-208ENST00000559119 XKRY2A2RUG3 117 aa2.02□□□□□ -2.09
VPS13C-208ENST00000559119 MAP1LC3B2A6NCE7 125 aa2.02□□□□□ -2.09
VPS13C-208ENST00000559119 OR6C6A6NF89 314 aa2.02□□□□□ -2.09
VPS13C-208ENST00000559119 ZNF860A6NHJ4 632 aa2.02□□□□□ -2.09
VPS13C-208ENST00000559119 OR5B21A6NL26 309 aa2.02□□□□□ -2.09
VPS13C-208ENST00000559119 ZNF727A8MUV8 499 aa2.02□□□□□ -2.09
VPS13C-208ENST00000559119 ZNF736B4DX44 427 aaPredicted RBP2.02□□□□□ -2.09
VPS13C-208ENST00000559119 EEF1E1-BLOC1S5C9J1V9 151 aa2.02□□□□□ -2.09
VPS13C-208ENST00000559119 XKRYO14609 159 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms