RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 SLC39A9Q9NUM3 307 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 JKAMPQ9P055 326 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 NAV3Q8IVL0 2385 aa8.72□□□□□ -1.01
CUX1-217ENST00000558836 HIVEP3Q5T1R4 2406 aa8.72□□□□□ -1.01
CUX1-217ENST00000558836 NDUFS6O75380 124 aaKnown RBP8.72□□□□□ -1.01
CUX1-217ENST00000558836 NQO2P16083 231 aa8.72□□□□□ -1.01
CUX1-217ENST00000558836 RELBQ01201 579 aa8.72□□□□□ -1.01
CUX1-217ENST00000558836 CDSNQ15517 529 aa8.72□□□□□ -1.01
CUX1-217ENST00000558836 TMEM41BQ5BJD5 291 aa8.72□□□□□ -1.01
CUX1-217ENST00000558836 FFAR4Q5NUL3 377 aa8.72□□□□□ -1.01
CUX1-217ENST00000558836 ZCCHC14Q8WYQ9 949 aaKnown RBP8.72□□□□□ -1.01
CUX1-217ENST00000558836 PSMG3Q9BT73 122 aaPredicted RBP8.72□□□□□ -1.01
CUX1-217ENST00000558836 NPCDR1Q9BY65 106 aa8.72□□□□□ -1.01
CUX1-217ENST00000558836 IDI2-AS1Q9NZ38 188 aa8.72□□□□□ -1.01
CUX1-217ENST00000558836 BTBD17A6NE02 478 aa8.72□□□□□ -1.01
CUX1-217ENST00000558836 HBE1P02100 147 aa8.72□□□□□ -1.01
CUX1-217ENST00000558836 PCP4P48539 62 aa8.72□□□□□ -1.01
CUX1-217ENST00000558836 SERF2P84101 59 aa8.72□□□□□ -1.01
CUX1-217ENST00000558836 AVPI1Q5T686 147 aa8.72□□□□□ -1.01
CUX1-217ENST00000558836 OR4A47Q6IF82 309 aa8.72□□□□□ -1.01
CUX1-217ENST00000558836 DDB2Q92466 427 aa8.72□□□□□ -1.01
CUX1-217ENST00000558836 HIST1H2BAQ96A08 127 aa8.72□□□□□ -1.01
CUX1-217ENST00000558836 TMEM147Q9BVK8 224 aa8.72□□□□□ -1.01
CUX1-217ENST00000558836 DYNLRB1Q9NP97 96 aa8.72□□□□□ -1.01
CUX1-217ENST00000558836 A0A1B0GW64 132 aa8.71□□□□□ -1.01
CUX1-217ENST00000558836 SRRM4A7MD48 611 aaKnown RBP8.71□□□□□ -1.01
CUX1-217ENST00000558836 SHISA9B4DS77 424 aa8.71□□□□□ -1.01
CUX1-217ENST00000558836 TAGLN2P37802 199 aaKnown RBP8.71□□□□□ -1.01
CUX1-217ENST00000558836 DLK1P80370 383 aa8.71□□□□□ -1.01
CUX1-217ENST00000558836 DIAPH2-AS1Q14236 149 aa8.71□□□□□ -1.01
CUX1-217ENST00000558836 ZNF506Q5JVG8 444 aa8.71□□□□□ -1.01
CUX1-217ENST00000558836 ZNF343Q6P1L6 599 aa8.71□□□□□ -1.01
CUX1-217ENST00000558836 TCTEX1D1Q8N7M0 179 aa8.71□□□□□ -1.01
CUX1-217ENST00000558836 OR10G4Q8NGN3 311 aa8.71□□□□□ -1.01
CUX1-217ENST00000558836 OR10G9Q8NGN4 311 aa8.71□□□□□ -1.01
CUX1-217ENST00000558836 OR10G7Q8NGN6 311 aa8.71□□□□□ -1.01
CUX1-217ENST00000558836 RNASE6Q93091 150 aaKnown RBP8.71□□□□□ -1.01
CUX1-217ENST00000558836 PINX1Q96BK5 328 aaKnown RBP8.71□□□□□ -1.01
CUX1-217ENST00000558836 WNK2Q9Y3S1 2297 aa8.71□□□□□ -1.02
CUX1-217ENST00000558836 PPIAL4EA0A075B759 164 aa8.71□□□□□ -1.02
CUX1-217ENST00000558836 LOC102723971A0A1B0GUV8 181 aa8.71□□□□□ -1.02
CUX1-217ENST00000558836 PPIAL4DF5H284 164 aa8.71□□□□□ -1.02
CUX1-217ENST00000558836 SOX15O60248 233 aa8.71□□□□□ -1.02
CUX1-217ENST00000558836 IFNA4P05014 189 aa8.71□□□□□ -1.02
CUX1-217ENST00000558836 PPIAL4FP0DN26 164 aa8.71□□□□□ -1.02
CUX1-217ENST00000558836 HOXA1P49639 335 aaPredicted RBP8.71□□□□□ -1.02
CUX1-217ENST00000558836 NHLH1Q02575 133 aa8.71□□□□□ -1.02
CUX1-217ENST00000558836 TEX36Q5VZQ5 186 aa8.71□□□□□ -1.02
CUX1-217ENST00000558836 DMRTC2Q8IXT2 367 aaPredicted RBP8.71□□□□□ -1.02
CUX1-217ENST00000558836 TMEM170AQ8WVE7 144 aa8.71□□□□□ -1.02
CUX1-217ENST00000558836 CIB3Q96Q77 187 aaPredicted RBP8.71□□□□□ -1.02
CUX1-217ENST00000558836 MSRB2Q9Y3D2 182 aa8.71□□□□□ -1.02
CUX1-217ENST00000558836 PPIAL4AQ9Y536 164 aa8.71□□□□□ -1.02
CUX1-217ENST00000558836 ZFHX3Q15911 3703 aa8.71□□□□□ -1.02
CUX1-217ENST00000558836 TRAV38-1A0A0B4J264 116 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.7□□□□□ -1.02
CUX1-217ENST00000558836 TMEM178BH3BS89 294 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 HSPB1P04792 205 aaKnown RBP8.7□□□□□ -1.02
CUX1-217ENST00000558836 CT45A6P0DMU7 189 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 CT45A5P0DMU8 189 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 CT45A7P0DMV0 189 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 BCL2P10415 239 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 RAB7AP51149 207 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 TMEM200BQ69YZ2 307 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 ZNF439Q8NDP4 499 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 OR4S2Q8NH73 311 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 FAM122AQ96E09 287 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 PATZ1Q9HBE1 687 aaKnown RBP8.7□□□□□ -1.02
CUX1-217ENST00000558836 TMEM106BQ9NUM4 274 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 PIEZO1Q92508 2521 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 OR8U8P0C7N1 319 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 CD1BP29016 333 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 SPCS3P61009 180 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 ZNF674Q2M3X9 581 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 DPPA3Q6W0C5 159 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 ZNF709Q8N972 641 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 MBD3L1Q8WWY6 194 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 HIPK2Q9H2X6 1198 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 PPP1R14DQ9NXH3 145 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 RPUSD1Q9UJJ7 312 aaKnown RBP8.7□□□□□ -1.02
CUX1-217ENST00000558836 TCF19Q9Y242 345 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 hADV38S2A0JD32 116 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 OR2C1O95371 312 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 RAB13P51153 203 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 FLI1Q01543 452 aaPredicted RBP8.7□□□□□ -1.02
CUX1-217ENST00000558836 RBPJQ06330 500 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 KHDC3LQ587J8 217 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 RAB24Q969Q5 203 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 NIPSNAP3BQ9BS92 247 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 EGLN1Q9GZT9 426 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 CTSZQ9UBR2 303 aa8.7□□□□□ -1.02
CUX1-217ENST00000558836 TRAV1-1A0A0B4J248 108 aa8.69□□□□□ -1.02
CUX1-217ENST00000558836 NKX6-3A6NJ46 265 aa8.69□□□□□ -1.02
CUX1-217ENST00000558836 ZNF729A6NN14 1252 aaPredicted RBP8.69□□□□□ -1.02
CUX1-217ENST00000558836 LY6HO94772 140 aa8.69□□□□□ -1.02
CUX1-217ENST00000558836 VDAC2P45880 294 aaPredicted RBP8.69□□□□□ -1.02
CUX1-217ENST00000558836 SSTP61278 116 aa8.69□□□□□ -1.02
CUX1-217ENST00000558836 HABP2Q14520 560 aaPredicted RBP8.69□□□□□ -1.02
CUX1-217ENST00000558836 AARDQ4LEZ3 155 aa8.69□□□□□ -1.02
CUX1-217ENST00000558836 CA5BP1Q8WTZ4 195 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms