RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	FBLL1	A6NHQ2	334 aa	Known RBP	4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	DLL1	O00548	723 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	CLEC3B	P05452	202 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	UCP1	P25874	307 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	COL8A1	P27658	744 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	MPV17	P39210	176 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	SLC25A53	Q5H9E4	307 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	DCAF10	Q5QP82	559 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	MAFA	Q8NHW3	353 aa	Predicted RBP	4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	NABP1	Q96AH0	204 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	NRN1	Q9NPD7	142 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	PPIAL4A	Q9Y536	164 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	KLF2	Q9Y5W3	355 aa	Predicted RBP	4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	FAM90A26	D6RGX4	464 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	SCGB1C2	P0DMR2	95 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	GATA2	P23769	480 aa	Predicted RBP	4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	CFP	P27918	469 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	PTGDS	P41222	190 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	ASPHD1	Q5U4P2	390 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	EAF1	Q96JC9	268 aa	Predicted RBP	4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	NDFIP1	Q9BT67	221 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	DCTN5	Q9BTE1	182 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	WDR54	Q9H977	334 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	CRIM1	Q9NZV1	1036 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	HILPDA	Q9Y5L2	63 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	COL4A4	P53420	1690 aa	Predicted RBP	4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	TRAV24	A0A0B4J272	114 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005		A0A0G2JRQ6	117 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	IZUMO1R	A6ND01	250 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	FAM181B	A6NEQ2	426 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005		A8MWP6	167 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	KLF7	O75840	302 aa	Predicted RBP	4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	HLA-DQA1	P01909	254 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	ADH4	P08319	380 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	ZNF726P1	Q15940	193 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	TMEM177	Q53S58	311 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	PEAR1	Q5VY43	1037 aa	Predicted RBP	4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	SLC25A34	Q6PIV7	304 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	C19orf35	Q6ZS72	473 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	RNF166	Q96A37	237 aa	Predicted RBP	4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	CCL13	Q99616	98 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	C1QTNF5	Q9BXJ0	243 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	FNDC4	Q9H6D8	234 aa	Predicted RBP	4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	FBLN5	Q9UBX5	448 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	SCN2A	Q99250	2005 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	NPIPB13	A6NJU9	1138 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	NPIPB4	C9JG80	1138 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	LILRA1	O75019	489 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	LCN2	P80188	198 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	C1orf194	Q5T5A4	169 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	DNM1P46	Q6ZS02	220 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	NFAM1	Q8NET5	270 aa	Predicted RBP	4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	OR51G1	Q8NGK1	321 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	CCL17	Q92583	94 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	HARBI1	Q96MB7	349 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	AGMAT	Q9BSE5	352 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	GAL3ST2	Q9H3Q3	398 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	DENND4A	Q7Z401	1863 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	MKRN2OS	H3BPM6	223 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	DLEU1	O43261	78 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	MOS	P00540	346 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	COX5B	P10606	129 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	TDH	Q8IZJ6	230 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	SPEM1	Q8N4L4	309 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	C5orf17	Q8NAS9	161 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	PKIB	Q9C010	78 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	EGLN1	Q9GZT9	426 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	TMEM242	Q9NWH2	141 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	LEPROTL1	O95214	131 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	CA1	P00915	261 aa	Predicted RBP	4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	PRSS1	P07477	247 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	NPS	P0C0P6	89 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	TSPAN7	P41732	249 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	GNB2	P62879	340 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	SPEM2	Q0P670	501 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	TRA2A	Q13595	282 aa	Known RBP eCLIP	4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	FBXW9	Q5XUX1	488 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	FAM90A2P	Q658T7	463 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	HCP5	Q6MZN7	132 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	ZNF497	Q6ZNH5	498 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	DMRTC2	Q8IXT2	367 aa	Predicted RBP	4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	OR13A1	Q8NGR1	328 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	NABP2	Q9BQ15	211 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	ZPBP	Q9BS86	351 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	ANAPC10	Q9UM13	185 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	LAMTOR2	Q9Y2Q5	125 aa		4.2	□□□□□ -1.74
SYNE2-223	ENST00000557005	IGHV3-72	A0A0B4J1Y9	119 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	MT-ND6	P03923	174 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	LINC00869	P0C866	280 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	COX19	Q49B96	90 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	ACSF3	Q4G176	576 aa	Predicted RBP	4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	OR10J3	Q5JRS4	329 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	OCC1	Q8TAD7	63 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	CCDC88C	Q9P219	2028 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	TMEM189	A5PLL7	270 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	PINLYP	A6NC86	204 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	TNFSF13	O75888	250 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	ANOS1	P23352	680 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	PLP1	P60201	277 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	TM4SF20	Q53R12	229 aa		4.19	□□□□□ -1.74

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