RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 CCL25O15444 150 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 DNPH1O43598 174 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 MPDU1O75352 247 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 HYPMO75409 117 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 NXPH2O95156 264 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 NDUFB8O95169 186 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 IGKV1D-33P01593 117 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 IGKV1-33P01594 117 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 IGKV1-5P01602 117 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 PPBPP02775 128 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 IGHV4-34P06331 123 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 CYC1P08574 325 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 IGLC2P0DOY2 106 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 IGLC3P0DOY3 106 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 ANOS1P23352 680 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 TNFSF4P23510 183 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 NPPCP23582 126 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 TIMP3P35625 211 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 ARR3P36575 388 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 CTRLP40313 264 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 TFPI2P48307 235 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 GFERP55789 205 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 OR1D5P58170 312 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 CCL7P80098 99 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 PMP22Q01453 160 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 TGFBR3Q03167 851 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 CFHR1Q03591 330 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 SRSF1Q07955 248 aaKnown RBP eCLIP2.39□□□□□ -2.03
SLIRP-208ENST00000556956 CATR1Q13166 79 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 MMDQ15546 238 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 VAMP3Q15836 100 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 IGFBP7Q16270 282 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 PRSS8Q16651 343 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 VWC2Q2TAL6 325 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 CEACAM21Q3KPI0 293 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 AARDQ4LEZ3 155 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 ETFRF1Q6IPR1 90 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 PARM1Q6UWI2 310 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 C16orf47Q6ZP98 133 aaPredicted RBP2.39□□□□□ -2.03
SLIRP-208ENST00000556956 AAED1Q7RTV5 226 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 C17orf82Q86X59 251 aaPredicted RBP2.39□□□□□ -2.03
SLIRP-208ENST00000556956 CALHM1Q8IU99 346 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 SFTPA2Q8IWL1 248 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 MCEMP1Q8IX19 187 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 ZDHHC23Q8IYP9 409 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 FAM58AQ8N1B3 248 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 FGFRL1Q8N441 504 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 STPG4Q8N801 248 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 SCCPDHQ8NBX0 429 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 OR5A2Q8NGI9 324 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 OCC1Q8TAD7 63 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 RNASE8Q8TDE3 154 aaKnown RBP2.39□□□□□ -2.03
SLIRP-208ENST00000556956 GATAD1Q8WUU5 269 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 RAB1CQ92928 201 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 APH1AQ96BI3 265 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 SPACA9Q96E40 222 aaPredicted RBP2.39□□□□□ -2.03
SLIRP-208ENST00000556956 KCNS1Q96KK3 526 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 TAAR6Q96RI8 345 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 FAM103A1Q9BTL3 118 aaKnown RBP2.39□□□□□ -2.03
SLIRP-208ENST00000556956 LRRC61Q9BV99 259 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 DEFB126Q9BYW3 111 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 OR2H1Q9GZK4 316 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 UBE2ZQ9H832 354 aaPredicted RBP2.39□□□□□ -2.03
SLIRP-208ENST00000556956 NRN1Q9NPD7 142 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 TUBG2Q9NRH3 451 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 TMEM38BQ9NVV0 291 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 KCNIP1Q9NZI2 227 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 MRPL27Q9P0M9 148 aaKnown RBP2.39□□□□□ -2.03
SLIRP-208ENST00000556956 ZNF581Q9P0T4 197 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 KCNS2Q9ULS6 477 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 TP53TG3Q9ULZ0 132 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 PPP1R3CQ9UQK1 317 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 TBL2Q9Y4P3 447 aaKnown RBP2.39□□□□□ -2.03
SLIRP-208ENST00000556956 C2orf16Q68DN1 1984 aa2.38□□□□□ -2.03
SLIRP-208ENST00000556956 IGLV3-12A0A075B6K2 115 aa2.38□□□□□ -2.03
SLIRP-208ENST00000556956 TRAV9-2A0A087WT02 112 aa2.38□□□□□ -2.03
SLIRP-208ENST00000556956 IGHV2OR16-5A0A0B4J2B6 119 aa2.38□□□□□ -2.03
SLIRP-208ENST00000556956 IGHV3-20A0A0C4DH32 117 aa2.38□□□□□ -2.03
SLIRP-208ENST00000556956 IGHV2-70DA0A0C4DH43 119 aa2.38□□□□□ -2.03
SLIRP-208ENST00000556956 IGKV1-6A0A0C4DH72 117 aa2.38□□□□□ -2.03
SLIRP-208ENST00000556956 IGHV1-69-2A0A0G2JMI3 117 aa2.38□□□□□ -2.03
SLIRP-208ENST00000556956 A0A1W2PS18 150 aa2.38□□□□□ -2.03
SLIRP-208ENST00000556956 IGLC7A0M8Q6 106 aa2.38□□□□□ -2.03
SLIRP-208ENST00000556956 CBY3A6NI87 242 aa2.38□□□□□ -2.03
SLIRP-208ENST00000556956 OR5B21A6NL26 309 aa2.38□□□□□ -2.03
SLIRP-208ENST00000556956 LRRC30A6NM36 301 aa2.38□□□□□ -2.03
SLIRP-208ENST00000556956 ANKRD30BLA7E2S9 258 aa2.38□□□□□ -2.03
SLIRP-208ENST00000556956 PMS2P5A8MQ11 134 aa2.38□□□□□ -2.03
SLIRP-208ENST00000556956 C10orf142B7Z368 130 aa2.38□□□□□ -2.03
SLIRP-208ENST00000556956 C9JCJ5 164 aa2.38□□□□□ -2.03
SLIRP-208ENST00000556956 HSBP1L1C9JCN9 74 aa2.38□□□□□ -2.03
SLIRP-208ENST00000556956 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.38□□□□□ -2.03
SLIRP-208ENST00000556956 IFNL4K9M1U5 179 aa2.38□□□□□ -2.03
SLIRP-208ENST00000556956 CDIPTO14735 213 aa2.38□□□□□ -2.03
SLIRP-208ENST00000556956 SH2D1BO14796 132 aa2.38□□□□□ -2.03
SLIRP-208ENST00000556956 HMGB3O15347 200 aaKnown RBP2.38□□□□□ -2.03
SLIRP-208ENST00000556956 DUX1O43812 170 aa2.38□□□□□ -2.03
SLIRP-208ENST00000556956 CIDEAO60543 219 aa2.38□□□□□ -2.03
SLIRP-208ENST00000556956 ZNF324O75467 553 aaPredicted RBP2.38□□□□□ -2.03
SLIRP-208ENST00000556956 S1PR2O95136 353 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms