RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 EGR2P11161 476 aaPredicted RBP11.22□□□□□ -0.61
CCDC88C-207ENST00000554051 RND3P61587 244 aa11.22□□□□□ -0.61
CCDC88C-207ENST00000554051 RPL8P62917 257 aaKnown RBP11.22□□□□□ -0.61
CCDC88C-207ENST00000554051 DGCR2P98153 550 aa11.22□□□□□ -0.61
CCDC88C-207ENST00000554051 SURF2Q15527 256 aaPredicted RBP11.22□□□□□ -0.61
CCDC88C-207ENST00000554051 FAM209BQ5JX69 171 aa11.22□□□□□ -0.61
CCDC88C-207ENST00000554051 STEAP1BQ6NZ63 245 aa11.22□□□□□ -0.61
CCDC88C-207ENST00000554051 IDO2Q6ZQW0 420 aa11.22□□□□□ -0.61
CCDC88C-207ENST00000554051 LHFPL1Q86WI0 220 aa11.22□□□□□ -0.61
CCDC88C-207ENST00000554051 LINC00482Q8N8I6 264 aa11.22□□□□□ -0.61
CCDC88C-207ENST00000554051 ZNF491Q8N8L2 437 aa11.22□□□□□ -0.61
CCDC88C-207ENST00000554051 CCDC71LQ8N9Z2 235 aa11.22□□□□□ -0.61
CCDC88C-207ENST00000554051 DPF1Q92782 380 aa11.22□□□□□ -0.61
CCDC88C-207ENST00000554051 DGCR14Q96DF8 476 aaKnown RBP11.22□□□□□ -0.61
CCDC88C-207ENST00000554051 P2RX4Q99571 388 aa11.22□□□□□ -0.61
CCDC88C-207ENST00000554051 FAM103A1Q9BTL3 118 aaKnown RBP11.22□□□□□ -0.61
CCDC88C-207ENST00000554051 ZNF430Q9H8G1 570 aaPredicted RBP11.22□□□□□ -0.61
CCDC88C-207ENST00000554051 M0QYG6 137 aa11.21□□□□□ -0.61
CCDC88C-207ENST00000554051 CCL24O00175 119 aa11.21□□□□□ -0.61
CCDC88C-207ENST00000554051 RAMP3O60896 148 aa11.21□□□□□ -0.61
CCDC88C-207ENST00000554051 LGALS1P09382 135 aaKnown RBP11.21□□□□□ -0.61
CCDC88C-207ENST00000554051 AKAIN1P0CW23 69 aa11.21□□□□□ -0.61
CCDC88C-207ENST00000554051 PGAM2P15259 253 aa11.21□□□□□ -0.61
CCDC88C-207ENST00000554051 TNFSF8P32971 234 aa11.21□□□□□ -0.61
CCDC88C-207ENST00000554051 FAUP35544 74 aaKnown RBP11.21□□□□□ -0.61
CCDC88C-207ENST00000554051 TPPP2P59282 170 aa11.21□□□□□ -0.61
CCDC88C-207ENST00000554051 AP3S2P59780 193 aa11.21□□□□□ -0.61
CCDC88C-207ENST00000554051 SSBP2P81877 361 aaPredicted RBP11.21□□□□□ -0.61
CCDC88C-207ENST00000554051 PJVKQ0ZLH3 352 aa11.21□□□□□ -0.61
CCDC88C-207ENST00000554051 HIST2H2BDQ6DRA6 164 aa11.21□□□□□ -0.61
CCDC88C-207ENST00000554051 OR4A47Q6IF82 309 aa11.21□□□□□ -0.61
CCDC88C-207ENST00000554051 ETV3LQ6ZN32 361 aa11.21□□□□□ -0.61
CCDC88C-207ENST00000554051 DMBX1Q8NFW5 382 aa11.21□□□□□ -0.61
CCDC88C-207ENST00000554051 ZFAND1Q8TCF1 268 aa11.21□□□□□ -0.61
CCDC88C-207ENST00000554051 PRRT1Q99946 306 aa11.21□□□□□ -0.61
CCDC88C-207ENST00000554051 SRSF8Q9BRL6 282 aaKnown RBP11.21□□□□□ -0.61
CCDC88C-207ENST00000554051 HRASLSQ9HDD0 168 aa11.21□□□□□ -0.61
CCDC88C-207ENST00000554051 SLC2A9Q9NRM0 540 aa11.21□□□□□ -0.61
CCDC88C-207ENST00000554051 ZMAT5Q9UDW3 170 aaKnown RBP11.21□□□□□ -0.61
CCDC88C-207ENST00000554051 MARCH11A6NNE9 402 aa11.2□□□□□ -0.62
CCDC88C-207ENST00000554051 ATG12O94817 140 aa11.2□□□□□ -0.62
CCDC88C-207ENST00000554051 DHFRP00374 187 aa11.2□□□□□ -0.62
CCDC88C-207ENST00000554051 OR9G9P0C7N8 305 aa11.2□□□□□ -0.62
CCDC88C-207ENST00000554051 RPA2P15927 270 aa11.2□□□□□ -0.62
CCDC88C-207ENST00000554051 HLA-GP17693 338 aa11.2□□□□□ -0.62
CCDC88C-207ENST00000554051 RPL27AP46776 148 aaKnown RBP11.2□□□□□ -0.62
CCDC88C-207ENST00000554051 BRWD1-AS2P59051 145 aa11.2□□□□□ -0.62
CCDC88C-207ENST00000554051 FHL3Q13643 280 aa11.2□□□□□ -0.62
CCDC88C-207ENST00000554051 SPANXN2Q5MJ10 180 aa11.2□□□□□ -0.62
CCDC88C-207ENST00000554051 KPRPQ5T749 579 aaPredicted RBP11.2□□□□□ -0.62
CCDC88C-207ENST00000554051 SAMD5Q5TGI4 173 aa11.2□□□□□ -0.62
CCDC88C-207ENST00000554051 HSD17B13Q7Z5P4 300 aaPredicted RBP11.2□□□□□ -0.62
CCDC88C-207ENST00000554051 MRPL41Q8IXM3 137 aaKnown RBP11.2□□□□□ -0.62
CCDC88C-207ENST00000554051 TERB2Q8NHR7 220 aa11.2□□□□□ -0.62
CCDC88C-207ENST00000554051 TSC22D3Q99576 134 aa11.2□□□□□ -0.62
CCDC88C-207ENST00000554051 TINAGL1Q9GZM7 467 aaPredicted RBP11.2□□□□□ -0.62
CCDC88C-207ENST00000554051 ZNF355PQ9NSJ1 428 aa11.2□□□□□ -0.62
CCDC88C-207ENST00000554051 TMEM140Q9NV12 185 aa11.2□□□□□ -0.62
CCDC88C-207ENST00000554051 SLC2A8Q9NY64 477 aa11.2□□□□□ -0.62
CCDC88C-207ENST00000554051 C13orf42A0A1B0GVH6 325 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 DPPA5A6NC42 116 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 MSGN1A6NI15 193 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 FAM223BA6NKX1 122 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 CYB5BO43169 146 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 SOX15O60248 233 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 S1PR2O95136 353 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 TRGV3P03979 118 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 ZNF616Q08AN1 781 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 SCGB2B2Q4G0G5 96 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 PHLDA2Q53GA4 152 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 REC114Q7Z4M0 266 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 TBC1D26Q86UD7 250 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 FAM223AQ8IWN6 122 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 VKORC1L1Q8N0U8 176 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 RAX2Q96IS3 184 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 USMG5Q96IX5 58 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 SCGB3A2Q96PL1 93 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 GPHA2Q96T91 129 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 SOSTQ9BQB4 213 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 COMMD5Q9GZQ3 224 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 KLK15Q9H2R5 256 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 SCP2D1Q9UJQ7 156 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 C14orf166Q9Y224 244 aaKnown RBP11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 ZNF257Q9Y2Q1 563 aa11.19□□□□□ -0.62
CCDC88C-207ENST00000554051 NBEAL1Q6ZS30 2694 aa11.18□□□□□ -0.62
CCDC88C-207ENST00000554051 ANKRD20A5PA0PJZ0 165 aa11.18□□□□□ -0.62
CCDC88C-207ENST00000554051 NPIPB5A8MRT5 1133 aa11.18□□□□□ -0.62
CCDC88C-207ENST00000554051 H0Y980 276 aa11.18□□□□□ -0.62
CCDC88C-207ENST00000554051 I3L521 148 aa11.18□□□□□ -0.62
CCDC88C-207ENST00000554051 SERPINE2P07093 398 aa11.18□□□□□ -0.62
CCDC88C-207ENST00000554051 ZNF735P0CB33 412 aa11.18□□□□□ -0.62
CCDC88C-207ENST00000554051 ETV6P41212 452 aa11.18□□□□□ -0.62
CCDC88C-207ENST00000554051 PPP5CP53041 499 aa11.18□□□□□ -0.62
CCDC88C-207ENST00000554051 MRGPRG-AS1Q2M3A8 158 aa11.18□□□□□ -0.62
CCDC88C-207ENST00000554051 LCNL1Q6ZST4 164 aa11.18□□□□□ -0.62
CCDC88C-207ENST00000554051 SSX9Q7RTT3 188 aa11.18□□□□□ -0.62
CCDC88C-207ENST00000554051 ADAD2Q8NCV1 583 aaKnown RBP11.18□□□□□ -0.62
CCDC88C-207ENST00000554051 COA4Q9NYJ1 87 aa11.18□□□□□ -0.62
CCDC88C-207ENST00000554051 FKBP11Q9NYL4 201 aa11.18□□□□□ -0.62
CCDC88C-207ENST00000554051 COPZ2Q9P299 210 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms