RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ST6GALNAC6Q969X2 333 aa21.47■■□□□ 1.03
CCDC88C-205ENST00000553403 PRNDQ9UKY0 176 aa21.47■■□□□ 1.03
CCDC88C-205ENST00000553403 FBXO7Q9Y3I1 522 aa21.47■■□□□ 1.03
CCDC88C-205ENST00000553403 TIMM9Q9Y5J7 89 aa21.47■■□□□ 1.03
CCDC88C-205ENST00000553403 H0YJW9 148 aa21.46■■□□□ 1.03
CCDC88C-205ENST00000553403 HSPE1P61604 102 aaKnown RBP21.46■■□□□ 1.03
CCDC88C-205ENST00000553403 SERF2P84101 59 aa21.46■■□□□ 1.03
CCDC88C-205ENST00000553403 VWC2Q2TAL6 325 aa21.46■■□□□ 1.03
CCDC88C-205ENST00000553403 TAF15Q92804 592 aaKnown RBP eCLIP21.46■■□□□ 1.03
CCDC88C-205ENST00000553403 TMEM231Q9H6L2 316 aa21.46■■□□□ 1.03
CCDC88C-205ENST00000553403 FAM96BQ9Y3D0 163 aa21.46■■□□□ 1.03
CCDC88C-205ENST00000553403 NBASA2RRP1 2371 aa21.45■■□□□ 1.02
CCDC88C-205ENST00000553403 BTBD17A6NE02 478 aa21.45■■□□□ 1.02
CCDC88C-205ENST00000553403 IL3RAP26951 378 aa21.45■■□□□ 1.02
CCDC88C-205ENST00000553403 WDR25Q64LD2 544 aaPredicted RBP21.45■■□□□ 1.02
CCDC88C-205ENST00000553403 NABP2Q9BQ15 211 aa21.45■■□□□ 1.02
CCDC88C-205ENST00000553403 PCGF1Q9BSM1 259 aa21.45■■□□□ 1.02
CCDC88C-205ENST00000553403 RSG1Q9BU20 258 aa21.45■■□□□ 1.02
CCDC88C-205ENST00000553403 FLNBO75369 2602 aaKnown RBP21.45■■□□□ 1.02
CCDC88C-205ENST00000553403 UPK2O00526 184 aa21.44■■□□□ 1.02
CCDC88C-205ENST00000553403 TLE4Q04727 773 aa21.44■■□□□ 1.02
CCDC88C-205ENST00000553403 TMEM177Q53S58 311 aa21.44■■□□□ 1.02
CCDC88C-205ENST00000553403 CENPVQ7Z7K6 275 aaPredicted RBP21.44■■□□□ 1.02
CCDC88C-205ENST00000553403 CHODLQ9H9P2 273 aa21.44■■□□□ 1.02
CCDC88C-205ENST00000553403 HEYLQ9NQ87 328 aaPredicted RBP21.44■■□□□ 1.02
CCDC88C-205ENST00000553403 CARHSP1Q9Y2V2 147 aaKnown RBP21.44■■□□□ 1.02
CCDC88C-205ENST00000553403 ASH1LQ9NR48 2969 aaKnown RBP21.44■■□□□ 1.02
CCDC88C-205ENST00000553403 UBE2L5PA0A1B0GUS4 154 aa21.44■■□□□ 1.02
CCDC88C-205ENST00000553403 A0A1W2PPR1 153 aa21.44■■□□□ 1.02
CCDC88C-205ENST00000553403 IGKV1-16P04430 117 aa21.44■■□□□ 1.02
CCDC88C-205ENST00000553403 SEC11CQ9BY50 192 aa21.44■■□□□ 1.02
CCDC88C-205ENST00000553403 BET1LQ9NYM9 111 aa21.44■■□□□ 1.02
CCDC88C-205ENST00000553403 PPIAL4CA0A0B4J2A2 164 aa21.43■■□□□ 1.02
CCDC88C-205ENST00000553403 A0A1B0GW64 132 aa21.43■■□□□ 1.02
CCDC88C-205ENST00000553403 H2AFB1P0C5Y9 115 aa21.43■■□□□ 1.02
CCDC88C-205ENST00000553403 PPIAL4GP0DN37 164 aa21.43■■□□□ 1.02
CCDC88C-205ENST00000553403 IGFBP2P18065 325 aa21.43■■□□□ 1.02
CCDC88C-205ENST00000553403 ADCYAP1P18509 176 aa21.43■■□□□ 1.02
CCDC88C-205ENST00000553403 PEA15Q15121 130 aa21.43■■□□□ 1.02
CCDC88C-205ENST00000553403 PDPNQ86YL7 162 aa21.43■■□□□ 1.02
CCDC88C-205ENST00000553403 LY6G5BQ8NDX9 201 aa21.43■■□□□ 1.02
CCDC88C-205ENST00000553403 SCRT1Q9BWW7 348 aa21.43■■□□□ 1.02
CCDC88C-205ENST00000553403 ZNF257Q9Y2Q1 563 aa21.43■■□□□ 1.02
CCDC88C-205ENST00000553403 SRRM4A7MD48 611 aaKnown RBP21.42■■□□□ 1.02
CCDC88C-205ENST00000553403 F8W036 122 aa21.42■■□□□ 1.02
CCDC88C-205ENST00000553403 LY6HO94772 140 aa21.42■■□□□ 1.02
CCDC88C-205ENST00000553403 M6PRP20645 277 aa21.42■■□□□ 1.02
CCDC88C-205ENST00000553403 HOXA1P49639 335 aaPredicted RBP21.42■■□□□ 1.02
CCDC88C-205ENST00000553403 GUK1Q16774 197 aa21.42■■□□□ 1.02
CCDC88C-205ENST00000553403 SP5Q6BEB4 398 aaPredicted RBP21.42■■□□□ 1.02
CCDC88C-205ENST00000553403 SPSB3Q6PJ21 355 aa21.42■■□□□ 1.02
CCDC88C-205ENST00000553403 PBDC1Q9BVG4 233 aa21.42■■□□□ 1.02
CCDC88C-205ENST00000553403 C19orf84I3L1E1 186 aa21.41■■□□□ 1.02
CCDC88C-205ENST00000553403 IFNA10P01566 189 aa21.41■■□□□ 1.02
CCDC88C-205ENST00000553403 HBE1P02100 147 aa21.41■■□□□ 1.02
CCDC88C-205ENST00000553403 PRRX1P54821 245 aa21.41■■□□□ 1.02
CCDC88C-205ENST00000553403 DEFA5Q01523 94 aa21.41■■□□□ 1.02
CCDC88C-205ENST00000553403 FKBP11Q9NYL4 201 aa21.41■■□□□ 1.02
CCDC88C-205ENST00000553403 OR51B2Q9Y5P1 312 aa21.41■■□□□ 1.02
CCDC88C-205ENST00000553403 H7C2Y5 167 aa21.4■■□□□ 1.02
CCDC88C-205ENST00000553403 TGIF2LXQ8IUE1 241 aa21.4■■□□□ 1.02
CCDC88C-205ENST00000553403 LHX4Q969G2 390 aa21.4■■□□□ 1.02
CCDC88C-205ENST00000553403 FLYWCH2Q96CP2 140 aaKnown RBP21.4■■□□□ 1.02
CCDC88C-205ENST00000553403 GGACTQ9BVM4 153 aa21.4■■□□□ 1.02
CCDC88C-205ENST00000553403 MS4A7Q9GZW8 240 aaPredicted RBP21.4■■□□□ 1.02
CCDC88C-205ENST00000553403 PATZ1Q9HBE1 687 aaKnown RBP21.4■■□□□ 1.02
CCDC88C-205ENST00000553403 ENY2Q9NPA8 101 aa21.4■■□□□ 1.02
CCDC88C-205ENST00000553403 SETXQ7Z333 2677 aaKnown RBP21.4■■□□□ 1.02
CCDC88C-205ENST00000553403 ADGRG4Q8IZF6 3080 aa21.4■■□□□ 1.02
CCDC88C-205ENST00000553403 IGHV2-26A0A0B4J1V2 119 aa21.4■■□□□ 1.02
CCDC88C-205ENST00000553403 hCG_1809904A0A1W2PP81 198 aa21.4■■□□□ 1.02
CCDC88C-205ENST00000553403 A0A1W2PPE2 198 aa21.4■■□□□ 1.02
CCDC88C-205ENST00000553403 A0A1W2PR64 198 aa21.4■■□□□ 1.02
CCDC88C-205ENST00000553403 A0A1W2PRV1 198 aa21.4■■□□□ 1.02
CCDC88C-205ENST00000553403 FAM157AC9JC47 383 aa21.4■■□□□ 1.02
CCDC88C-205ENST00000553403 KBTBD11O94819 623 aa21.4■■□□□ 1.02
CCDC88C-205ENST00000553403 REG1BP48304 166 aa21.4■■□□□ 1.02
CCDC88C-205ENST00000553403 RAB2AP61019 212 aa21.4■■□□□ 1.02
CCDC88C-205ENST00000553403 WASHC3Q9Y3C0 194 aa21.4■■□□□ 1.02
CCDC88C-205ENST00000553403 TRAV1-1A0A0B4J248 108 aa21.39■■□□□ 1.01
CCDC88C-205ENST00000553403 SAA1P0DJI8 122 aaPredicted RBP21.39■■□□□ 1.01
CCDC88C-205ENST00000553403 MDKP21741 143 aaPredicted RBP21.39■■□□□ 1.01
CCDC88C-205ENST00000553403 MC5RP33032 325 aa21.39■■□□□ 1.01
CCDC88C-205ENST00000553403 RAB13P51153 203 aa21.39■■□□□ 1.01
CCDC88C-205ENST00000553403 RAB11AP62491 216 aa21.39■■□□□ 1.01
CCDC88C-205ENST00000553403 SVBPQ8N300 66 aa21.39■■□□□ 1.01
CCDC88C-205ENST00000553403 OR4C13Q8NGP0 309 aa21.39■■□□□ 1.01
CCDC88C-205ENST00000553403 HARBI1Q96MB7 349 aa21.39■■□□□ 1.01
CCDC88C-205ENST00000553403 UBTD1Q9HAC8 227 aa21.39■■□□□ 1.01
CCDC88C-205ENST00000553403 HIVEP3Q5T1R4 2406 aa21.38■■□□□ 1.01
CCDC88C-205ENST00000553403 LIPFP07098 398 aa21.38■■□□□ 1.01
CCDC88C-205ENST00000553403 FGF7P21781 194 aa21.38■■□□□ 1.01
CCDC88C-205ENST00000553403 RPS16P62249 146 aaKnown RBP21.38■■□□□ 1.01
CCDC88C-205ENST00000553403 TMEM41BQ5BJD5 291 aa21.38■■□□□ 1.01
CCDC88C-205ENST00000553403 ETV3LQ6ZN32 361 aa21.38■■□□□ 1.01
CCDC88C-205ENST00000553403 BEND2Q8NDZ0 799 aa21.38■■□□□ 1.01
CCDC88C-205ENST00000553403 OR4A5Q8NH83 315 aa21.38■■□□□ 1.01
CCDC88C-205ENST00000553403 CLEC7AQ9BXN2 247 aa21.38■■□□□ 1.01
CCDC88C-205ENST00000553403 SMDT1Q9H4I9 107 aa21.38■■□□□ 1.01
CCDC88C-205ENST00000553403 RPRMQ9NS64 109 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms