RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 PARLQ9H300 379 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 SLC45A2Q9UMX9 530 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 CHTOPQ9Y3Y2 248 aaKnown RBP6.41□□□□□ -1.38
LIMA1-216ENST00000552909 RNF115Q9Y4L5 304 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 PPIAL4AQ9Y536 164 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 SLC25A15Q9Y619 301 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 TMEM56-RWDD3S4R434 201 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 AADACP22760 399 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 NPBWR2P48146 333 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 PSMB3P49720 205 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 PPP1CBP62140 327 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 SERF2P84101 59 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 BSPH1Q075Z2 132 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 CRIP3Q6Q6R5 217 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 CALHM1Q8IU99 346 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 SELENOHQ8IZQ5 122 aaKnown RBP6.41□□□□□ -1.38
LIMA1-216ENST00000552909 ZNF709Q8N972 641 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 ZNF738Q8NE65 137 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 NUDT10Q8NFP7 164 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 MRPL30Q8TCC3 161 aaKnown RBP6.41□□□□□ -1.38
LIMA1-216ENST00000552909 LHX4Q969G2 390 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 PINX1Q96BK5 328 aaKnown RBP6.41□□□□□ -1.38
LIMA1-216ENST00000552909 REPIN1Q9BWE0 567 aaKnown RBP6.41□□□□□ -1.38
LIMA1-216ENST00000552909 PATZ1Q9HBE1 687 aaKnown RBP6.41□□□□□ -1.38
LIMA1-216ENST00000552909 PNRC2Q9NPJ4 139 aaKnown RBP6.41□□□□□ -1.38
LIMA1-216ENST00000552909 TUBG2Q9NRH3 451 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 UQCR10Q9UDW1 63 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 LAMTOR2Q9Y2Q5 125 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 RAI1Q7Z5J4 1906 aaPredicted RBP6.4□□□□□ -1.38
LIMA1-216ENST00000552909 LOC105371242A0A075B767 164 aa6.4□□□□□ -1.38
LIMA1-216ENST00000552909 ZNF503-AS2A6NEH8 195 aa6.4□□□□□ -1.38
LIMA1-216ENST00000552909 NXPH3O95157 252 aa6.4□□□□□ -1.38
LIMA1-216ENST00000552909 VENTXO95231 258 aa6.4□□□□□ -1.38
LIMA1-216ENST00000552909 ZNF83P51522 516 aa6.4□□□□□ -1.38
LIMA1-216ENST00000552909 HNRNPA3P51991 378 aaKnown RBP6.4□□□□□ -1.38
LIMA1-216ENST00000552909 UBE2G2P60604 165 aa6.4□□□□□ -1.38
LIMA1-216ENST00000552909 TGFBR3Q03167 851 aa6.4□□□□□ -1.38
LIMA1-216ENST00000552909 LINC01551Q86U37 167 aa6.4□□□□□ -1.38
LIMA1-216ENST00000552909 OR4C5Q8NGB2 326 aa6.4□□□□□ -1.38
LIMA1-216ENST00000552909 OR5AU1Q8NGC0 362 aa6.4□□□□□ -1.38
LIMA1-216ENST00000552909 OR1K1Q8NGR3 316 aa6.4□□□□□ -1.38
LIMA1-216ENST00000552909 SVIPQ8NHG7 77 aa6.4□□□□□ -1.38
LIMA1-216ENST00000552909 FGFBP3Q8TAT2 258 aa6.4□□□□□ -1.38
LIMA1-216ENST00000552909 PLPPR1Q8TBJ4 325 aa6.4□□□□□ -1.38
LIMA1-216ENST00000552909 CORO2AQ92828 525 aa6.4□□□□□ -1.38
LIMA1-216ENST00000552909 BCL2L2Q92843 193 aaPredicted RBP6.4□□□□□ -1.38
LIMA1-216ENST00000552909 TXN2Q99757 166 aa6.4□□□□□ -1.38
LIMA1-216ENST00000552909 VPS25Q9BRG1 176 aa6.4□□□□□ -1.38
LIMA1-216ENST00000552909 TMEM204Q9BSN7 226 aa6.4□□□□□ -1.38
LIMA1-216ENST00000552909 PARD6GQ9BYG4 376 aaPredicted RBP6.4□□□□□ -1.38
LIMA1-216ENST00000552909 UBTD1Q9HAC8 227 aa6.4□□□□□ -1.38
LIMA1-216ENST00000552909 PLEK2Q9NYT0 353 aa6.4□□□□□ -1.38
LIMA1-216ENST00000552909 OR6C6A6NF89 314 aa6.4□□□□□ -1.39
LIMA1-216ENST00000552909 F5H5K5 113 aa6.4□□□□□ -1.39
LIMA1-216ENST00000552909 PPYP01298 95 aa6.4□□□□□ -1.39
LIMA1-216ENST00000552909 ESDP10768 282 aa6.4□□□□□ -1.39
LIMA1-216ENST00000552909 VDAC1P21796 283 aa6.4□□□□□ -1.39
LIMA1-216ENST00000552909 ANOS1P23352 680 aa6.4□□□□□ -1.39
LIMA1-216ENST00000552909 ADMP35318 185 aa6.4□□□□□ -1.39
LIMA1-216ENST00000552909 PAX9P55771 341 aa6.4□□□□□ -1.39
LIMA1-216ENST00000552909 SUMO1P63165 101 aaKnown RBP6.4□□□□□ -1.39
LIMA1-216ENST00000552909 TMEM267Q0VDI3 215 aaPredicted RBP6.4□□□□□ -1.39
LIMA1-216ENST00000552909 TESK1Q15569 626 aa6.4□□□□□ -1.39
LIMA1-216ENST00000552909 MSMO1Q15800 293 aa6.4□□□□□ -1.39
LIMA1-216ENST00000552909 SPATA45Q537H7 98 aa6.4□□□□□ -1.39
LIMA1-216ENST00000552909 NMSQ5H8A3 153 aa6.4□□□□□ -1.39
LIMA1-216ENST00000552909 Q6ZN92 141 aa6.4□□□□□ -1.39
LIMA1-216ENST00000552909 TBC1D26Q86UD7 250 aa6.4□□□□□ -1.39
LIMA1-216ENST00000552909 PIGTQ969N2 578 aa6.4□□□□□ -1.39
LIMA1-216ENST00000552909 SLC39A9Q9NUM3 307 aa6.4□□□□□ -1.39
LIMA1-216ENST00000552909 COX11Q9Y6N1 276 aa6.4□□□□□ -1.39
LIMA1-216ENST00000552909 NIPBLQ6KC79 2804 aaeCLIP6.39□□□□□ -1.39
LIMA1-216ENST00000552909 IGHV2-70DA0A0C4DH43 119 aa6.39□□□□□ -1.39
LIMA1-216ENST00000552909 GRIFINA4D1Z8 144 aa6.39□□□□□ -1.39
LIMA1-216ENST00000552909 H3BP45 60 aa6.39□□□□□ -1.39
LIMA1-216ENST00000552909 M0R1B8 84 aa6.39□□□□□ -1.39
LIMA1-216ENST00000552909 GOSR1O95249 250 aa6.39□□□□□ -1.39
LIMA1-216ENST00000552909 CD99P14209 185 aa6.39□□□□□ -1.39
LIMA1-216ENST00000552909 ZNF32P17041 273 aa6.39□□□□□ -1.39
LIMA1-216ENST00000552909 GNRHRP30968 328 aa6.39□□□□□ -1.39
LIMA1-216ENST00000552909 COMPP49747 757 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-216ENST00000552909 PCBD1P61457 104 aa6.39□□□□□ -1.39
LIMA1-216ENST00000552909 PSG4Q00888 419 aa6.39□□□□□ -1.39
LIMA1-216ENST00000552909 RSPO1Q2MKA7 263 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-216ENST00000552909 MORN2Q502X0 79 aa6.39□□□□□ -1.39
LIMA1-216ENST00000552909 FBLN7Q53RD9 439 aa6.39□□□□□ -1.39
LIMA1-216ENST00000552909 SPIN3Q5JUX0 258 aa6.39□□□□□ -1.39
LIMA1-216ENST00000552909 CLEC2AQ6UVW9 174 aa6.39□□□□□ -1.39
LIMA1-216ENST00000552909 TMEM144Q7Z5S9 345 aa6.39□□□□□ -1.39
LIMA1-216ENST00000552909 MYPOPQ86VE0 399 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-216ENST00000552909 C1orf162Q8NEQ5 155 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-216ENST00000552909 OR4F5Q8NH21 305 aa6.39□□□□□ -1.39
LIMA1-216ENST00000552909 PP6455Q8WZ26 134 aa6.39□□□□□ -1.39
LIMA1-216ENST00000552909 PGAM5Q96HS1 289 aa6.39□□□□□ -1.39
LIMA1-216ENST00000552909 OR4F4Q96R69 305 aa6.39□□□□□ -1.39
LIMA1-216ENST00000552909 RNF2Q99496 336 aa6.39□□□□□ -1.39
LIMA1-216ENST00000552909 SAMD10Q9BYL1 202 aa6.39□□□□□ -1.39
LIMA1-216ENST00000552909 HSPB7Q9UBY9 170 aa6.39□□□□□ -1.39
LIMA1-216ENST00000552909 MED13LQ71F56 2210 aa6.39□□□□□ -1.39
LIMA1-216ENST00000552909 CHD3Q12873 2000 aaKnown RBP6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms