RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 MORN2Q502X0 79 aa6.21□□□□□ -1.42
LIMA1-213ENST00000552720 MIC13Q5XKP0 118 aa6.21□□□□□ -1.42
LIMA1-213ENST00000552720 TREML4Q6UXN2 200 aa6.21□□□□□ -1.42
LIMA1-213ENST00000552720 LINC01551Q86U37 167 aa6.21□□□□□ -1.42
LIMA1-213ENST00000552720 OR2T10Q8NGZ9 312 aa6.21□□□□□ -1.42
LIMA1-213ENST00000552720 LURAP1Q96LR2 239 aa6.21□□□□□ -1.42
LIMA1-213ENST00000552720 CIB3Q96Q77 187 aaPredicted RBP6.21□□□□□ -1.42
LIMA1-213ENST00000552720 MS4A5Q9H3V2 200 aa6.21□□□□□ -1.42
LIMA1-213ENST00000552720 WASF3Q9UPY6 502 aa6.21□□□□□ -1.42
LIMA1-213ENST00000552720 PIEZO2Q9H5I5 2752 aa6.21□□□□□ -1.42
LIMA1-213ENST00000552720 ANKRD11Q6UB99 2663 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-213ENST00000552720 DCHS2Q6V1P9 2916 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 A6NJY4 79 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 C17orf112F2Z3M2 114 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 AQP7O14520 342 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 SMAD7O15105 426 aaKnown RBP6.2□□□□□ -1.42
LIMA1-213ENST00000552720 RBFOX2O43251 390 aaKnown RBP eCLIP6.2□□□□□ -1.42
LIMA1-213ENST00000552720 SPINT2O43291 252 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 ARL14EPLP0DKL9 152 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 KITLGP21583 273 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 DDTP30046 118 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 GCH1P30793 250 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 ACOT6Q3I5F7 207 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-213ENST00000552720 DUX4L9Q6RFH8 374 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-213ENST00000552720 SSMEM1Q8WWF3 244 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 C1orf159Q96HA4 380 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 MGST2Q99735 147 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 HEYLQ9NQ87 328 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-213ENST00000552720 ZNF292O60281 2723 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 CUL9Q8IWT3 2517 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 DYSFO75923 2080 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 NAV3Q8IVL0 2385 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 OTOGLQ3ZCN5 2332 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 A0A087X0M5 115 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 A0A1B0GV90 55 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 A0A1B0GX30 115 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 PLXNB1O43157 2135 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 GGCTO75223 188 aaKnown RBP6.2□□□□□ -1.42
LIMA1-213ENST00000552720 IGHG3P01860 377 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 IL3RAP26951 378 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 LOXL3P58215 753 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 ZNF718Q3SXZ3 478 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 ACTL10Q5JWF8 245 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 SPATA31B1PQ5VZV4 182 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 TCF23Q7RTU1 214 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 FAM90A1Q86YD7 464 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 TGIF2LYQ8IUE0 185 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 GCSAMQ8N6F7 178 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 OR4A16Q8NH70 328 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 DIRC2Q96SL1 478 aa6.2□□□□□ -1.42
LIMA1-213ENST00000552720 A0A0U1RQK1 487 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 SCO2A0A1W2PP80 73 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 A0A1W2PPV4 95 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 ZNF705GA8MUZ8 300 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-213ENST00000552720 PRSS46E5RG02 174 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 GFRA3O60609 400 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 HPRT1P00492 218 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 VDAC2P45880 294 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-213ENST00000552720 PKIAP61925 76 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 HTD2P86397 168 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 RELBQ01201 579 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 JOSD1Q15040 202 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-213ENST00000552720 VHLLQ6RSH7 139 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 ZNF600Q6ZNG1 722 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 ZNF664Q8N3J9 261 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 GGTLC1Q9BX51 225 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 IFI27L2Q9H2X8 130 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 TMEM140Q9NV12 185 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 PXMP4Q9Y6I8 212 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 ZNF320A2RRD8 509 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 M0R296 226 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 NUPR1O60356 82 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 TNFSF13O75888 250 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 IGLV1-44P01699 117 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 ADH4P08319 380 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 THBS3P49746 956 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 ZNF83P51522 516 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 MOGAT3Q86VF5 341 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 TCTEX1D1Q8N7M0 179 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 FAM122AQ96E09 287 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 SEPSECSQ9HD40 501 aaKnown RBP6.19□□□□□ -1.42
LIMA1-213ENST00000552720 DKK4Q9UBT3 224 aa6.19□□□□□ -1.42
LIMA1-213ENST00000552720 YTHDF2Q9Y5A9 579 aaKnown RBP6.19□□□□□ -1.42
LIMA1-213ENST00000552720 GVINP1Q7Z2Y8 2422 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 ZNF891A8MT65 544 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-213ENST00000552720 SRRM5B3KS81 715 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 DVL1O14640 695 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 SPRY3O43610 288 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 FOXH1O75593 365 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 VENTXO95231 258 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 SNRPCP09234 159 aaKnown RBP6.18□□□□□ -1.42
LIMA1-213ENST00000552720 RNF224P0DH78 156 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 SPCS3P61009 180 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 PDLIM3Q53GG5 364 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-213ENST00000552720 ARSJQ5FYB0 599 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-213ENST00000552720 COA6Q5JTJ3 125 aaKnown RBP6.18□□□□□ -1.42
LIMA1-213ENST00000552720 TMEM256Q8N2U0 113 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 RPRMLQ8N4K4 120 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 STARD4Q96DR4 205 aa6.18□□□□□ -1.42
LIMA1-213ENST00000552720 OR2V2Q96R30 315 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms