RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 S100A7AQ86SG5 101 aa13.16□□□□□ -0.3
CUX1-211ENST00000546411 NHLRC2Q8NBF2 726 aa13.16□□□□□ -0.3
CUX1-211ENST00000546411 PRR7Q8TB68 274 aa13.16□□□□□ -0.3
CUX1-211ENST00000546411 HILPDAQ9Y5L2 63 aa13.16□□□□□ -0.3
CUX1-211ENST00000546411 PRUNE2Q8WUY3 3088 aa13.16□□□□□ -0.3
CUX1-211ENST00000546411 NOTCH2Q04721 2471 aa13.16□□□□□ -0.3
CUX1-211ENST00000546411 TLN1Q9Y490 2541 aaKnown RBP13.16□□□□□ -0.3
CUX1-211ENST00000546411 TRBV23-1A0A0A0MS06 115 aa13.16□□□□□ -0.3
CUX1-211ENST00000546411 CFPP27918 469 aa13.16□□□□□ -0.3
CUX1-211ENST00000546411 RPL29P47914 159 aaKnown RBP13.16□□□□□ -0.3
CUX1-211ENST00000546411 HSPE1P61604 102 aaKnown RBP13.16□□□□□ -0.3
CUX1-211ENST00000546411 ZNF497Q6ZNH5 498 aa13.16□□□□□ -0.3
CUX1-211ENST00000546411 IGF2RP11717 2491 aa13.16□□□□□ -0.3
CUX1-211ENST00000546411 ADCYAP1P18509 176 aa13.16□□□□□ -0.3
CUX1-211ENST00000546411 GATA2P23769 480 aaPredicted RBP13.16□□□□□ -0.3
CUX1-211ENST00000546411 AMTP48728 403 aa13.16□□□□□ -0.3
CUX1-211ENST00000546411 FAM53AQ6NSI3 398 aaPredicted RBP13.16□□□□□ -0.3
CUX1-211ENST00000546411 GP6Q9HCN6 339 aa13.16□□□□□ -0.3
CUX1-211ENST00000546411 C9JQL5 133 aa13.15□□□□□ -0.3
CUX1-211ENST00000546411 PDE6DO43924 150 aa13.15□□□□□ -0.3
CUX1-211ENST00000546411 CSN1S1P47710 185 aa13.15□□□□□ -0.3
CUX1-211ENST00000546411 Q56UQ5 140 aa13.15□□□□□ -0.3
CUX1-211ENST00000546411 SPSB4Q96A44 273 aa13.15□□□□□ -0.3
CUX1-211ENST00000546411 ABHD17AQ96GS6 310 aa13.15□□□□□ -0.3
CUX1-211ENST00000546411 ANKHD1Q8IWZ3 2542 aaKnown RBP13.15□□□□□ -0.3
CUX1-211ENST00000546411 TRAV34A0A0B4J273 112 aa13.15□□□□□ -0.3
CUX1-211ENST00000546411 LOC102723971A0A1B0GUV8 181 aa13.15□□□□□ -0.3
CUX1-211ENST00000546411 SNURFLB1AK76 121 aa13.15□□□□□ -0.3
CUX1-211ENST00000546411 GATCO43716 136 aaKnown RBP13.15□□□□□ -0.3
CUX1-211ENST00000546411 MMDQ15546 238 aa13.15□□□□□ -0.3
CUX1-211ENST00000546411 OR51G1Q8NGK1 321 aa13.15□□□□□ -0.3
CUX1-211ENST00000546411 TMEM167BQ9NRX6 74 aa13.15□□□□□ -0.3
CUX1-211ENST00000546411 JPT1Q9UK76 154 aa13.15□□□□□ -0.3
CUX1-211ENST00000546411 RRHO14718 337 aa13.15□□□□□ -0.3
CUX1-211ENST00000546411 LINC00869P0C866 280 aa13.15□□□□□ -0.3
CUX1-211ENST00000546411 TRGC1P0CF51 173 aa13.15□□□□□ -0.3
CUX1-211ENST00000546411 LRRC75BQ2VPJ9 315 aa13.15□□□□□ -0.3
CUX1-211ENST00000546411 TIMM23BQ5SRD1 257 aa13.15□□□□□ -0.3
CUX1-211ENST00000546411 POM121Q96HA1 1249 aa13.15□□□□□ -0.3
CUX1-211ENST00000546411 SEBOXQ9HB31 216 aaPredicted RBP13.15□□□□□ -0.3
CUX1-211ENST00000546411 RALYQ9UKM9 306 aaKnown RBP13.15□□□□□ -0.3
CUX1-211ENST00000546411 ZNF253O75346 499 aa13.15□□□□□ -0.31
CUX1-211ENST00000546411 KIR2DL2P43627 348 aaPredicted RBP13.15□□□□□ -0.31
CUX1-211ENST00000546411 NPCDR1Q9BY65 106 aa13.15□□□□□ -0.31
CUX1-211ENST00000546411 BARX1Q9HBU1 254 aaPredicted RBP13.15□□□□□ -0.31
CUX1-211ENST00000546411 CLEC3BP05452 202 aa13.14□□□□□ -0.31
CUX1-211ENST00000546411 FAM87AP0C7U9 286 aa13.14□□□□□ -0.31
CUX1-211ENST00000546411 GCSAMLQ5JQS6 135 aa13.14□□□□□ -0.31
CUX1-211ENST00000546411 ZNF506Q5JVG8 444 aa13.14□□□□□ -0.31
CUX1-211ENST00000546411 Q6ZRM9 215 aa13.14□□□□□ -0.31
CUX1-211ENST00000546411 ANAPC16Q96DE5 110 aa13.14□□□□□ -0.31
CUX1-211ENST00000546411 CISD1Q9NZ45 108 aaKnown RBP13.14□□□□□ -0.31
CUX1-211ENST00000546411 J3QW42 95 aa13.14□□□□□ -0.31
CUX1-211ENST00000546411 RPL30P62888 115 aaKnown RBP13.14□□□□□ -0.31
CUX1-211ENST00000546411 RPL8P62917 257 aaKnown RBP13.14□□□□□ -0.31
CUX1-211ENST00000546411 FXYD3Q14802 87 aa13.14□□□□□ -0.31
CUX1-211ENST00000546411 RPEL1Q2QD12 228 aa13.14□□□□□ -0.31
CUX1-211ENST00000546411 FOXL2NBQ6ZUU3 175 aa13.14□□□□□ -0.31
CUX1-211ENST00000546411 LRTM2Q8N967 370 aa13.14□□□□□ -0.31
CUX1-211ENST00000546411 ASCL3Q9NQ33 180 aa13.14□□□□□ -0.31
CUX1-211ENST00000546411 CLN5O75503 358 aa13.14□□□□□ -0.31
CUX1-211ENST00000546411 CCL3L1P16619 93 aa13.14□□□□□ -0.31
CUX1-211ENST00000546411 KRTCAP3Q53RY4 240 aa13.14□□□□□ -0.31
CUX1-211ENST00000546411 RNASEKQ6P5S7 137 aaKnown RBP13.14□□□□□ -0.31
CUX1-211ENST00000546411 PDPNQ86YL7 162 aa13.14□□□□□ -0.31
CUX1-211ENST00000546411 OR2T6Q8NHC8 308 aa13.14□□□□□ -0.31
CUX1-211ENST00000546411 LINC01560Q8TB33 94 aa13.14□□□□□ -0.31
CUX1-211ENST00000546411 GTF3AQ92664 365 aaKnown RBP13.14□□□□□ -0.31
CUX1-211ENST00000546411 IGKV1-6A0A0C4DH72 117 aa13.13□□□□□ -0.31
CUX1-211ENST00000546411 CEACAM18A8MTB9 384 aa13.13□□□□□ -0.31
CUX1-211ENST00000546411 TPPP2P59282 170 aa13.13□□□□□ -0.31
CUX1-211ENST00000546411 CLDND2Q8NHS1 167 aa13.13□□□□□ -0.31
CUX1-211ENST00000546411 IDI2-AS1Q9NZ38 188 aa13.13□□□□□ -0.31
CUX1-211ENST00000546411 C10orf113Q5VZT2 155 aa13.13□□□□□ -0.31
CUX1-211ENST00000546411 ARFGEF3Q5TH69 2177 aa13.13□□□□□ -0.31
CUX1-211ENST00000546411 IGHV1-18A0A0C4DH31 117 aa13.13□□□□□ -0.31
CUX1-211ENST00000546411 CA2P00918 260 aa13.13□□□□□ -0.31
CUX1-211ENST00000546411 CSN3P07498 182 aa13.13□□□□□ -0.31
CUX1-211ENST00000546411 CD40P25942 277 aa13.13□□□□□ -0.31
CUX1-211ENST00000546411 RND2P52198 227 aa13.13□□□□□ -0.31
CUX1-211ENST00000546411 OR5I1Q13606 314 aa13.13□□□□□ -0.31
CUX1-211ENST00000546411 PEAR1Q5VY43 1037 aaPredicted RBP13.13□□□□□ -0.31
CUX1-211ENST00000546411 GCSAMQ8N6F7 178 aa13.13□□□□□ -0.31
CUX1-211ENST00000546411 RAB1CQ92928 201 aa13.13□□□□□ -0.31
CUX1-211ENST00000546411 PITPNC1Q9UKF7 332 aa13.13□□□□□ -0.31
CUX1-211ENST00000546411 A0A087X0M5 115 aa13.12□□□□□ -0.31
CUX1-211ENST00000546411 A0A1B0GX30 115 aa13.12□□□□□ -0.31
CUX1-211ENST00000546411 SS18L1O75177 396 aaPredicted RBP13.12□□□□□ -0.31
CUX1-211ENST00000546411 IGKV1-5P01602 117 aa13.12□□□□□ -0.31
CUX1-211ENST00000546411 CRYBB3P26998 211 aa13.12□□□□□ -0.31
CUX1-211ENST00000546411 ICAM4Q14773 271 aa13.12□□□□□ -0.31
CUX1-211ENST00000546411 GATAD1Q8WUU5 269 aa13.12□□□□□ -0.31
CUX1-211ENST00000546411 IFNL4K9M1U5 179 aa13.12□□□□□ -0.31
CUX1-211ENST00000546411 KIAA1644Q3SXP7 199 aa13.12□□□□□ -0.31
CUX1-211ENST00000546411 NMSQ5H8A3 153 aa13.12□□□□□ -0.31
CUX1-211ENST00000546411 TCTEX1D1Q8N7M0 179 aa13.12□□□□□ -0.31
CUX1-211ENST00000546411 MDS2Q8NDY4 140 aa13.12□□□□□ -0.31
CUX1-211ENST00000546411 PSMG3Q9BT73 122 aaPredicted RBP13.12□□□□□ -0.31
CUX1-211ENST00000546411 PPP1R14DQ9NXH3 145 aa13.12□□□□□ -0.31
CUX1-211ENST00000546411 ATRXP46100 2492 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms