RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 NDUFS6O75380 124 aaKnown RBP5.06□□□□□ -1.6
SYNE1-239ENST00000545694 RBMXL2O75526 392 aaKnown RBP5.06□□□□□ -1.6
SYNE1-239ENST00000545694 HBE1P02100 147 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 MBP02144 154 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 TFF1P04155 84 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 LIPFP07098 398 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 IGHV1-8P0DP01 117 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 SELLP14151 372 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 LGALS7P47929 136 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 DYNLT3P51808 116 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 DLX6P56179 175 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 BRWD1-AS2P59051 145 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 RAB11AP62491 216 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 GNB2P62879 340 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 HOXA4Q00056 320 aaPredicted RBP5.06□□□□□ -1.6
SYNE1-239ENST00000545694 NHLH2Q02577 135 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 PJVKQ0ZLH3 352 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 ZNF273Q14593 569 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 LTC4SQ16873 150 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 TMEM177Q53S58 311 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 PRAMEF5Q5TYX0 476 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 SLC25A24Q6NUK1 477 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 BTNL3Q6UXE8 466 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 ODF3L1Q8IXM7 274 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 ZCCHC24Q8N2G6 241 aaKnown RBP5.06□□□□□ -1.6
SYNE1-239ENST00000545694 KIR3DL3Q8N743 410 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 OR5AN1Q8NGI8 311 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 OR4C13Q8NGP0 309 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 OR10X1Q8NGY0 326 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 OR2G3Q8NGZ4 309 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 OR5B3Q8NH48 314 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 DTD1Q8TEA8 209 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 H1FXQ92522 213 aaKnown RBP5.06□□□□□ -1.6
SYNE1-239ENST00000545694 GPHA2Q96T91 129 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 RNF5Q99942 180 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 MAGT1Q9H0U3 335 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 TMEM133Q9H2Q1 129 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 RBKSQ9H477 322 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 KCNIP2Q9NS61 270 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 C19orf12Q9NSK7 152 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 DCAF16Q9NXF7 216 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 BET1LQ9NYM9 111 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 NUP50Q9UKX7 468 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 FOXA2Q9Y261 457 aaPredicted RBP5.06□□□□□ -1.6
SYNE1-239ENST00000545694 HRNRQ86YZ3 2850 aaPredicted RBP5.06□□□□□ -1.6
SYNE1-239ENST00000545694 USP9XQ93008 2570 aaPredicted RBP5.06□□□□□ -1.6
SYNE1-239ENST00000545694 EPG5Q9HCE0 2579 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 LRBAP50851 2863 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 TRAV1-1A0A0B4J248 108 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 A6NNC1 897 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 CEBPZOSA8MTT3 80 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 PPIHO43447 177 aaKnown RBP5.05□□□□□ -1.6
SYNE1-239ENST00000545694 KCNAB3O43448 404 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 TMEM50AO95807 157 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 PRH1P02810 166 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 ARG1P05089 322 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 IL6RP08887 468 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-239ENST00000545694 CT45A6P0DMU7 189 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 CT45A5P0DMU8 189 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 CT45A7P0DMV0 189 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 USF1P22415 310 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-239ENST00000545694 GNLYP22749 145 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 COL8A2P25067 703 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 ATP6V0CP27449 155 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 TAGLN2P37802 199 aaKnown RBP5.05□□□□□ -1.6
SYNE1-239ENST00000545694 CAMLGP49069 296 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 EFNA4P52798 201 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 HSPE1P61604 102 aaKnown RBP5.05□□□□□ -1.6
SYNE1-239ENST00000545694 TLE4Q04727 773 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 PMS2P11Q13670 270 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 CDSNQ15517 529 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 LRRC75BQ2VPJ9 315 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 RPL39P5Q59GN2 51 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 TOR2AQ5JU69 321 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 FAM74A1Q5RGS3 127 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 AKR1C8PQ5T2L2 129 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 PXDC1Q5TGL8 231 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 WDR25Q64LD2 544 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-239ENST00000545694 DUX4L9Q6RFH8 374 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-239ENST00000545694 BTNL8Q6UX41 500 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 LYPD2Q6UXB3 125 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 ZNF841Q6ZN19 808 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 CENPVQ7Z7K6 275 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-239ENST00000545694 ABHD12Q8N2K0 398 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 LILRB2Q8N423 598 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 LY6G5BQ8NDX9 201 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 OR10P1Q8NGE3 313 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 LHX4Q969G2 390 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 FLYWCH2Q96CP2 140 aaKnown RBP5.05□□□□□ -1.6
SYNE1-239ENST00000545694 RBMXL1Q96E39 390 aaKnown RBP5.05□□□□□ -1.6
SYNE1-239ENST00000545694 CXorf58Q96LI9 332 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 PBDC1Q9BVG4 233 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 TMEM147Q9BVK8 224 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 SMIM3Q9BZL3 60 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 PATZ1Q9HBE1 687 aaKnown RBP5.05□□□□□ -1.6
SYNE1-239ENST00000545694 WFDC1Q9HC57 220 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 ENY2Q9NPA8 101 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 SLC35D1Q9NTN3 355 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 TMEM14BQ9NUH8 114 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 TMEM140Q9NV12 185 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms