RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 GMPPAQ96IJ6 420 aaPredicted RBP12.09□□□□□ -0.47
LIMS1-215ENST00000544547 MAP1LC3CQ9BXW4 147 aa12.09□□□□□ -0.47
LIMS1-215ENST00000544547 MRPL13Q9BYD1 178 aaKnown RBP12.09□□□□□ -0.47
LIMS1-215ENST00000544547 IGKV1-12A0A0C4DH73 117 aa12.09□□□□□ -0.47
LIMS1-215ENST00000544547 IGKV1D-12P01611 117 aa12.09□□□□□ -0.47
LIMS1-215ENST00000544547 ACTL10Q5JWF8 245 aa12.09□□□□□ -0.47
LIMS1-215ENST00000544547 Q6ZVH6 145 aa12.09□□□□□ -0.47
LIMS1-215ENST00000544547 IL19Q9UHD0 177 aa12.09□□□□□ -0.47
LIMS1-215ENST00000544547 PATE3B3GLJ2 98 aa12.09□□□□□ -0.47
LIMS1-215ENST00000544547 HLA-DQA1P01909 254 aa12.09□□□□□ -0.47
LIMS1-215ENST00000544547 C12orf54Q6X4T0 127 aa12.09□□□□□ -0.47
LIMS1-215ENST00000544547 OCC1Q8TAD7 63 aa12.09□□□□□ -0.47
LIMS1-215ENST00000544547 PRR19A6NJB7 356 aa12.08□□□□□ -0.48
LIMS1-215ENST00000544547 FAM157AC9JC47 383 aa12.08□□□□□ -0.48
LIMS1-215ENST00000544547 CFPP27918 469 aa12.08□□□□□ -0.48
LIMS1-215ENST00000544547 PLP1P60201 277 aa12.08□□□□□ -0.48
LIMS1-215ENST00000544547 ABHD12Q8N2K0 398 aa12.08□□□□□ -0.48
LIMS1-215ENST00000544547 LYPD6BQ8NI32 183 aa12.08□□□□□ -0.48
LIMS1-215ENST00000544547 ZNF71Q9NQZ8 489 aaPredicted RBP12.08□□□□□ -0.48
LIMS1-215ENST00000544547 TMEM167BQ9NRX6 74 aa12.08□□□□□ -0.48
LIMS1-215ENST00000544547 FRMPD3Q5JV73 1810 aa12.08□□□□□ -0.48
LIMS1-215ENST00000544547 DRAM1Q8N682 238 aa12.08□□□□□ -0.48
LIMS1-215ENST00000544547 OR8A1Q8NGG7 326 aa12.08□□□□□ -0.48
LIMS1-215ENST00000544547 CT55Q8WUE5 264 aa12.08□□□□□ -0.48
LIMS1-215ENST00000544547 WNT5BQ9H1J7 359 aa12.08□□□□□ -0.48
LIMS1-215ENST00000544547 DLL3Q9NYJ7 618 aa12.08□□□□□ -0.48
LIMS1-215ENST00000544547 IL36BQ9NZH7 164 aa12.08□□□□□ -0.48
LIMS1-215ENST00000544547 TEX50A0A1B0GTY4 177 aa12.08□□□□□ -0.48
LIMS1-215ENST00000544547 TIAF1O95411 115 aa12.08□□□□□ -0.48
LIMS1-215ENST00000544547 CEBPDP49716 269 aaPredicted RBP12.08□□□□□ -0.48
LIMS1-215ENST00000544547 TEPPQ6URK8 271 aa12.08□□□□□ -0.48
LIMS1-215ENST00000544547 SMRP1Q8NCR6 262 aa12.08□□□□□ -0.48
LIMS1-215ENST00000544547 LRRC29Q8WV35 223 aa12.08□□□□□ -0.48
LIMS1-215ENST00000544547 FAM122AQ96E09 287 aa12.08□□□□□ -0.48
LIMS1-215ENST00000544547 NDFIP1Q9BT67 221 aa12.08□□□□□ -0.48
LIMS1-215ENST00000544547 LEPROTL1O95214 131 aa12.07□□□□□ -0.48
LIMS1-215ENST00000544547 VMA21Q3ZAQ7 101 aa12.07□□□□□ -0.48
LIMS1-215ENST00000544547 CENPWQ5EE01 88 aa12.07□□□□□ -0.48
LIMS1-215ENST00000544547 OR1L1Q8NH94 360 aa12.07□□□□□ -0.48
LIMS1-215ENST00000544547 C1orf147Q96MC9 270 aaPredicted RBP12.07□□□□□ -0.48
LIMS1-215ENST00000544547 GPR35Q9HC97 309 aa12.07□□□□□ -0.48
LIMS1-215ENST00000544547 PLXNA2O75051 1894 aa12.07□□□□□ -0.48
LIMS1-215ENST00000544547 GPR6P46095 362 aaPredicted RBP12.07□□□□□ -0.48
LIMS1-215ENST00000544547 ACSF3Q4G176 576 aaPredicted RBP12.07□□□□□ -0.48
LIMS1-215ENST00000544547 WDR74Q6RFH5 385 aaPredicted RBP12.07□□□□□ -0.48
LIMS1-215ENST00000544547 AKIRIN1Q9H9L7 192 aaPredicted RBP12.07□□□□□ -0.48
LIMS1-215ENST00000544547 A0A1W2PRS3 328 aa12.07□□□□□ -0.48
LIMS1-215ENST00000544547 C3AR1Q16581 482 aa12.07□□□□□ -0.48
LIMS1-215ENST00000544547 PRSS8Q16651 343 aa12.07□□□□□ -0.48
LIMS1-215ENST00000544547 VKORC1L1Q8N0U8 176 aa12.07□□□□□ -0.48
LIMS1-215ENST00000544547 SLC25A45Q8N413 288 aa12.07□□□□□ -0.48
LIMS1-215ENST00000544547 PMCHL2Q9BQD1 86 aa12.07□□□□□ -0.48
LIMS1-215ENST00000544547 TRAV1-1A0A0B4J248 108 aa12.07□□□□□ -0.48
LIMS1-215ENST00000544547 TMEM108Q6UXF1 575 aa12.07□□□□□ -0.48
LIMS1-215ENST00000544547 MUC15Q8N387 334 aa12.07□□□□□ -0.48
LIMS1-215ENST00000544547 LSM10Q969L4 123 aaKnown RBP12.07□□□□□ -0.48
LIMS1-215ENST00000544547 RNASE7Q9H1E1 156 aaKnown RBP12.07□□□□□ -0.48
LIMS1-215ENST00000544547 IGKV3D-11A0A0A0MRZ8 115 aa12.06□□□□□ -0.48
LIMS1-215ENST00000544547 E9PLN8 166 aa12.06□□□□□ -0.48
LIMS1-215ENST00000544547 RRHO14718 337 aa12.06□□□□□ -0.48
LIMS1-215ENST00000544547 LINC01551Q86U37 167 aa12.06□□□□□ -0.48
LIMS1-215ENST00000544547 SAP30LQ9HAJ7 183 aa12.06□□□□□ -0.48
LIMS1-215ENST00000544547 DEPPQ9NTK1 212 aa12.06□□□□□ -0.48
LIMS1-215ENST00000544547 A0A0G2JRQ6 117 aa12.06□□□□□ -0.48
LIMS1-215ENST00000544547 ODAMA1E959 279 aa12.06□□□□□ -0.48
LIMS1-215ENST00000544547 ZNF324BQ6AW86 544 aaPredicted RBP12.06□□□□□ -0.48
LIMS1-215ENST00000544547 TUSC5Q8IXB3 177 aa12.06□□□□□ -0.48
LIMS1-215ENST00000544547 IL36GQ9NZH8 169 aa12.06□□□□□ -0.48
LIMS1-215ENST00000544547 LILRA1O75019 489 aa12.06□□□□□ -0.48
LIMS1-215ENST00000544547 C19orf35Q6ZS72 473 aa12.06□□□□□ -0.48
LIMS1-215ENST00000544547 MPC1Q9Y5U8 109 aa12.06□□□□□ -0.48
LIMS1-215ENST00000544547 COL4A4P53420 1690 aaPredicted RBP12.06□□□□□ -0.48
LIMS1-215ENST00000544547 IGKV1-27A0A075B6S5 117 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 NPIPB13A6NJU9 1138 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 FAM90A27PA6NNH2 459 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 NCBP2LA6PVI3 153 aaKnown RBP12.05□□□□□ -0.48
LIMS1-215ENST00000544547 NPIPB4C9JG80 1138 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 ZNF207O43670 478 aaKnown RBP12.05□□□□□ -0.48
LIMS1-215ENST00000544547 ORM2P19652 201 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 NPY1RP25929 384 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 CDX2Q99626 313 aaPredicted RBP12.05□□□□□ -0.48
LIMS1-215ENST00000544547 NPVFQ9HCQ7 196 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 PLSCR2Q9NRY7 297 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 DOCK10Q96BY6 2186 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 CYC1P08574 325 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 TNFAIP6P98066 277 aaPredicted RBP12.05□□□□□ -0.48
LIMS1-215ENST00000544547 CEACAM21Q3KPI0 293 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 NUDT11Q96G61 164 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 LAMA3Q16787 3333 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 OR4C46A6NHA9 309 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 PLAUP00749 431 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 BTF3P20290 206 aaKnown RBP12.05□□□□□ -0.48
LIMS1-215ENST00000544547 UBE2V1Q13404 147 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 TDRG1Q3Y452 100 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 NMSQ5H8A3 153 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 LOXL4Q96JB6 756 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 CGAP01215 116 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 MAGEA5P43359 124 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 ZNF841Q6ZN19 808 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 RPEQ96AT9 228 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms