RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 TMEM140Q9NV12 185 aa11.45□□□□□ -0.58
TNFRSF1A-216ENST00000543995 NUDT15Q9NV35 164 aa11.45□□□□□ -0.58
TNFRSF1A-216ENST00000543995 BET1LQ9NYM9 111 aa11.45□□□□□ -0.58
TNFRSF1A-216ENST00000543995 MMP24Q9Y5R2 645 aa11.45□□□□□ -0.58
TNFRSF1A-216ENST00000543995 AP4M1O00189 453 aa11.44□□□□□ -0.58
TNFRSF1A-216ENST00000543995 ATP6V0E1O15342 81 aa11.44□□□□□ -0.58
TNFRSF1A-216ENST00000543995 ATG12O94817 140 aa11.44□□□□□ -0.58
TNFRSF1A-216ENST00000543995 ANXA7P20073 488 aaKnown RBP11.44□□□□□ -0.58
TNFRSF1A-216ENST00000543995 AKR1C2P52895 323 aa11.44□□□□□ -0.58
TNFRSF1A-216ENST00000543995 SUPT4H1P63272 117 aaKnown RBP11.44□□□□□ -0.58
TNFRSF1A-216ENST00000543995 CX3CL1P78423 397 aa11.44□□□□□ -0.58
TNFRSF1A-216ENST00000543995 PPP1R1AQ13522 171 aa11.44□□□□□ -0.58
TNFRSF1A-216ENST00000543995 FXYD3Q14802 87 aa11.44□□□□□ -0.58
TNFRSF1A-216ENST00000543995 POU2AF1Q16633 256 aa11.44□□□□□ -0.58
TNFRSF1A-216ENST00000543995 PRSS8Q16651 343 aa11.44□□□□□ -0.58
TNFRSF1A-216ENST00000543995 ZNF562Q6V9R5 426 aa11.44□□□□□ -0.58
TNFRSF1A-216ENST00000543995 H2BFWTQ7Z2G1 175 aa11.44□□□□□ -0.58
TNFRSF1A-216ENST00000543995 OR4A5Q8NH83 315 aa11.44□□□□□ -0.58
TNFRSF1A-216ENST00000543995 TMEM167AQ8TBQ9 72 aa11.44□□□□□ -0.58
TNFRSF1A-216ENST00000543995 NOL4LQ96MY1 436 aaPredicted RBP11.44□□□□□ -0.58
TNFRSF1A-216ENST00000543995 MDFIQ99750 246 aa11.44□□□□□ -0.58
TNFRSF1A-216ENST00000543995 ZNF430Q9H8G1 570 aaPredicted RBP11.44□□□□□ -0.58
TNFRSF1A-216ENST00000543995 LINC00527Q9UJ94 153 aa11.44□□□□□ -0.58
TNFRSF1A-216ENST00000543995 IGKV1-39P01597 117 aa11.43□□□□□ -0.58
TNFRSF1A-216ENST00000543995 IGKV1D-39P04432 117 aa11.43□□□□□ -0.58
TNFRSF1A-216ENST00000543995 UBE2MP61081 183 aaKnown RBP11.43□□□□□ -0.58
TNFRSF1A-216ENST00000543995 TMEM187Q14656 261 aa11.43□□□□□ -0.58
TNFRSF1A-216ENST00000543995 C4orf46Q504U0 113 aa11.43□□□□□ -0.58
TNFRSF1A-216ENST00000543995 TMEM268Q5VZI3 342 aa11.43□□□□□ -0.58
TNFRSF1A-216ENST00000543995 C12orf54Q6X4T0 127 aa11.43□□□□□ -0.58
TNFRSF1A-216ENST00000543995 CENPVQ7Z7K6 275 aaPredicted RBP11.43□□□□□ -0.58
TNFRSF1A-216ENST00000543995 KLHDC1Q8N7A1 406 aa11.43□□□□□ -0.58
TNFRSF1A-216ENST00000543995 GRPEL2Q8TAA5 225 aa11.43□□□□□ -0.58
TNFRSF1A-216ENST00000543995 CASTOR1Q8WTX7 329 aa11.43□□□□□ -0.58
TNFRSF1A-216ENST00000543995 CHPT1Q8WUD6 406 aa11.43□□□□□ -0.58
TNFRSF1A-216ENST00000543995 ARPC1AQ92747 370 aa11.43□□□□□ -0.58
TNFRSF1A-216ENST00000543995 SEC22AQ96IW7 307 aa11.43□□□□□ -0.58
TNFRSF1A-216ENST00000543995 PRR13Q9NZ81 148 aa11.43□□□□□ -0.58
TNFRSF1A-216ENST00000543995 NUBP2Q9Y5Y2 271 aa11.43□□□□□ -0.58
TNFRSF1A-216ENST00000543995 PLXNB1O43157 2135 aa11.43□□□□□ -0.58
TNFRSF1A-216ENST00000543995 UPK2O00526 184 aa11.42□□□□□ -0.58
TNFRSF1A-216ENST00000543995 SNAPC5O75971 98 aa11.42□□□□□ -0.58
TNFRSF1A-216ENST00000543995 SFT2D2O95562 160 aa11.42□□□□□ -0.58
TNFRSF1A-216ENST00000543995 CDS2O95674 445 aa11.42□□□□□ -0.58
TNFRSF1A-216ENST00000543995 HLA-AP01891 365 aaKnown RBP11.42□□□□□ -0.58
TNFRSF1A-216ENST00000543995 H2AFB2P0C5Z0 115 aa11.42□□□□□ -0.58
TNFRSF1A-216ENST00000543995 VDAC1P21796 283 aa11.42□□□□□ -0.58
TNFRSF1A-216ENST00000543995 COMPP49747 757 aaPredicted RBP11.42□□□□□ -0.58
TNFRSF1A-216ENST00000543995 RPL8P62917 257 aaKnown RBP11.42□□□□□ -0.58
TNFRSF1A-216ENST00000543995 SRPXP78539 464 aa11.42□□□□□ -0.58
TNFRSF1A-216ENST00000543995 NDPQ00604 133 aa11.42□□□□□ -0.58
TNFRSF1A-216ENST00000543995 DCTN2Q13561 401 aaKnown RBP11.42□□□□□ -0.58
TNFRSF1A-216ENST00000543995 KRTAP21-3Q3LHN1 58 aa11.42□□□□□ -0.58
TNFRSF1A-216ENST00000543995 NRARPQ7Z6K4 114 aa11.42□□□□□ -0.58
TNFRSF1A-216ENST00000543995 STPG2Q8N412 459 aa11.42□□□□□ -0.58
TNFRSF1A-216ENST00000543995 RBPMSQ93062 196 aaKnown RBP11.42□□□□□ -0.58
TNFRSF1A-216ENST00000543995 RRNAD1Q96FB5 475 aaKnown RBP11.42□□□□□ -0.58
TNFRSF1A-216ENST00000543995 FAM103A1Q9BTL3 118 aaKnown RBP11.42□□□□□ -0.58
TNFRSF1A-216ENST00000543995 PALMDQ9NP74 551 aa11.42□□□□□ -0.58
TNFRSF1A-216ENST00000543995 TRAV3A0A0B4J244 114 aa11.41□□□□□ -0.58
TNFRSF1A-216ENST00000543995 RBMXL2O75526 392 aaKnown RBP11.41□□□□□ -0.58
TNFRSF1A-216ENST00000543995 OR4E1P0C645 316 aa11.41□□□□□ -0.58
TNFRSF1A-216ENST00000543995 MAS1LP35410 378 aa11.41□□□□□ -0.58
TNFRSF1A-216ENST00000543995 RAB25P57735 213 aa11.41□□□□□ -0.58
TNFRSF1A-216ENST00000543995 PROK1P58294 105 aa11.41□□□□□ -0.58
TNFRSF1A-216ENST00000543995 SLC35B1P78383 322 aa11.41□□□□□ -0.58
TNFRSF1A-216ENST00000543995 ECSCRQ19T08 205 aa11.41□□□□□ -0.58
TNFRSF1A-216ENST00000543995 MRGPRG-AS1Q2M3A8 158 aa11.41□□□□□ -0.58
TNFRSF1A-216ENST00000543995 SELENOHQ8IZQ5 122 aaKnown RBP11.41□□□□□ -0.58
TNFRSF1A-216ENST00000543995 LHFPL5Q8TAF8 219 aa11.41□□□□□ -0.58
TNFRSF1A-216ENST00000543995 PHB2Q99623 299 aa11.41□□□□□ -0.58
TNFRSF1A-216ENST00000543995 GON7Q9BXV9 100 aa11.41□□□□□ -0.58
TNFRSF1A-216ENST00000543995 NSG2Q9Y328 171 aa11.41□□□□□ -0.58
TNFRSF1A-216ENST00000543995 WSB1Q9Y6I7 421 aa11.41□□□□□ -0.58
TNFRSF1A-216ENST00000543995 PIGBOS1A0A0B4J2F0 54 aa11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 C9orf170A2RU37 121 aa11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 PSMB11A5LHX3 300 aa11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 IGKV1-5P01602 117 aa11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 OPN1MWP04001 364 aa11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 IGF1P05019 195 aa11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 IL6RP08887 468 aaPredicted RBP11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 OR9G9P0C7N8 305 aa11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 OPN1MW2P0DN77 364 aa11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 OPN1MW3P0DN78 364 aa11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 HLA-GP17693 338 aa11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 TMEM267Q0VDI3 215 aaPredicted RBP11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 PLET1Q6UQ28 207 aa11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 LGI3Q8N145 548 aa11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 C3orf56Q8N813 242 aa11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 OR4A16Q8NH70 328 aa11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 SGMS2Q8NHU3 365 aa11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 SRSF12Q8WXF0 261 aaKnown RBP11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 IL22RA2Q969J5 263 aa11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 TMEM56Q96MV1 263 aa11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 COMMD5Q9GZQ3 224 aa11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 WNT10AQ9GZT5 417 aa11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 FBXO7Q9Y3I1 522 aa11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 TMEM56-RWDD3S4R434 201 aa11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 FBN1P35555 2871 aaKnown RBP11.4□□□□□ -0.58
TNFRSF1A-216ENST00000543995 TRAV41A0A0B4J266 112 aa11.4□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms