RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 BEST4Q8NFU0 473 aa9.98□□□□□ -0.81
RTN3-213ENST00000543552 BORCS5Q969J3 196 aa9.98□□□□□ -0.81
RTN3-213ENST00000543552 DIABLOQ9NR28 239 aa9.98□□□□□ -0.81
RTN3-213ENST00000543552 SLC2A8Q9NY64 477 aa9.98□□□□□ -0.81
RTN3-213ENST00000543552 TAS2R8Q9NYW2 309 aa9.98□□□□□ -0.81
RTN3-213ENST00000543552 TRAV18A0A075B6X5 111 aa9.97□□□□□ -0.81
RTN3-213ENST00000543552 LOC100506127A0A0U1RQW1 187 aa9.97□□□□□ -0.81
RTN3-213ENST00000543552 GGCTO75223 188 aaKnown RBP9.97□□□□□ -0.81
RTN3-213ENST00000543552 RBMXL2O75526 392 aaKnown RBP9.97□□□□□ -0.81
RTN3-213ENST00000543552 OR2J3O76001 311 aa9.97□□□□□ -0.81
RTN3-213ENST00000543552 TPPPO94811 219 aa9.97□□□□□ -0.81
RTN3-213ENST00000543552 IGLV2-14P01704 120 aa9.97□□□□□ -0.81
RTN3-213ENST00000543552 HIST1H1BP16401 226 aaKnown RBP9.97□□□□□ -0.81
RTN3-213ENST00000543552 CBX5P45973 191 aa9.97□□□□□ -0.81
RTN3-213ENST00000543552 RPL8P62917 257 aaKnown RBP9.97□□□□□ -0.81
RTN3-213ENST00000543552 MXD1Q05195 221 aa9.97□□□□□ -0.81
RTN3-213ENST00000543552 CATR1Q13166 79 aa9.97□□□□□ -0.81
RTN3-213ENST00000543552 VKORC1L1Q8N0U8 176 aa9.97□□□□□ -0.81
RTN3-213ENST00000543552 PUSL1Q8N0Z8 303 aaKnown RBP9.97□□□□□ -0.81
RTN3-213ENST00000543552 MFSD4AQ8N468 514 aa9.97□□□□□ -0.81
RTN3-213ENST00000543552 OR13F1Q8NGS4 319 aa9.97□□□□□ -0.81
RTN3-213ENST00000543552 OR4A5Q8NH83 315 aa9.97□□□□□ -0.81
RTN3-213ENST00000543552 SECTM1Q8WVN6 248 aa9.97□□□□□ -0.81
RTN3-213ENST00000543552 FYTTD1Q96QD9 318 aaKnown RBP9.97□□□□□ -0.81
RTN3-213ENST00000543552 THAP7Q9BT49 309 aaPredicted RBP9.97□□□□□ -0.81
RTN3-213ENST00000543552 SLC2A9Q9NRM0 540 aa9.97□□□□□ -0.81
RTN3-213ENST00000543552 ADAM30Q9UKF2 790 aa9.97□□□□□ -0.81
RTN3-213ENST00000543552 TEX22C9J3V5 150 aa9.96□□□□□ -0.82
RTN3-213ENST00000543552 CYB5BO43169 146 aa9.96□□□□□ -0.82
RTN3-213ENST00000543552 RBFOX2O43251 390 aaKnown RBP eCLIP9.96□□□□□ -0.82
RTN3-213ENST00000543552 ZNF735P0CB33 412 aa9.96□□□□□ -0.82
RTN3-213ENST00000543552 DEFA4P12838 97 aa9.96□□□□□ -0.82
RTN3-213ENST00000543552 HLA-GP17693 338 aa9.96□□□□□ -0.82
RTN3-213ENST00000543552 FCGR2CP31995 323 aa9.96□□□□□ -0.82
RTN3-213ENST00000543552 CD81P60033 236 aa9.96□□□□□ -0.82
RTN3-213ENST00000543552 EIF4EBP1Q13541 118 aaPredicted RBP9.96□□□□□ -0.82
RTN3-213ENST00000543552 HAGHQ16775 308 aa9.96□□□□□ -0.82
RTN3-213ENST00000543552 TIMM50Q3ZCQ8 353 aa9.96□□□□□ -0.82
RTN3-213ENST00000543552 IDNKQ5T6J7 187 aa9.96□□□□□ -0.82
RTN3-213ENST00000543552 HOGA1Q86XE5 327 aa9.96□□□□□ -0.82
RTN3-213ENST00000543552 CROCCP3Q8IVE0 287 aa9.96□□□□□ -0.82
RTN3-213ENST00000543552 EEF1AKMT3Q96AZ1 226 aa9.96□□□□□ -0.82
RTN3-213ENST00000543552 TECRQ9NZ01 308 aaKnown RBP9.96□□□□□ -0.82
RTN3-213ENST00000543552 FBXL7Q9UJT9 491 aa9.96□□□□□ -0.82
RTN3-213ENST00000543552 HMX3A6NHT5 357 aa9.95□□□□□ -0.82
RTN3-213ENST00000543552 LGALS9O00182 355 aa9.95□□□□□ -0.82
RTN3-213ENST00000543552 PPYP01298 95 aa9.95□□□□□ -0.82
RTN3-213ENST00000543552 CRYGCP07315 174 aa9.95□□□□□ -0.82
RTN3-213ENST00000543552 PSMB6P28072 239 aa9.95□□□□□ -0.82
RTN3-213ENST00000543552 MECP2P51608 486 aaKnown RBP9.95□□□□□ -0.82
RTN3-213ENST00000543552 TAS2R31P59538 309 aa9.95□□□□□ -0.82
RTN3-213ENST00000543552 CD300EQ496F6 205 aaPredicted RBP9.95□□□□□ -0.82
RTN3-213ENST00000543552 FAM106AQ4KMX7 169 aa9.95□□□□□ -0.82
RTN3-213ENST00000543552 SPAG16Q8N0X2 631 aa9.95□□□□□ -0.82
RTN3-213ENST00000543552 CD300LFQ8TDQ1 290 aa9.95□□□□□ -0.82
RTN3-213ENST00000543552 SLC25A38Q96DW6 304 aa9.95□□□□□ -0.82
RTN3-213ENST00000543552 CXorf58Q96LI9 332 aa9.95□□□□□ -0.82
RTN3-213ENST00000543552 SLC5A7Q9GZV3 580 aa9.95□□□□□ -0.82
RTN3-213ENST00000543552 HRASLSQ9HDD0 168 aa9.95□□□□□ -0.82
RTN3-213ENST00000543552 BET1LQ9NYM9 111 aa9.95□□□□□ -0.82
RTN3-213ENST00000543552 DYNC2H1Q8NCM8 4307 aaKnown RBP9.95□□□□□ -0.82
RTN3-213ENST00000543552 LYSTQ99698 3801 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 CSMD3Q7Z407 3707 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 TRBV7-1A0A0A6YYK4 115 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 IZUMO1RA6ND01 250 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 C2orf70A6NJV1 201 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 PPP5D1E7EU14 171 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 TNFSF12O43508 249 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 IL6RP08887 468 aaPredicted RBP9.94□□□□□ -0.82
RTN3-213ENST00000543552 FGF2P09038 288 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 FOLR2P14207 255 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 NQO2P16083 231 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 ARL3P36405 182 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 HERV-K104P61576 105 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 NEDD8Q15843 81 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 OR4A47Q6IF82 309 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 SSX9Q7RTT3 188 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 GPHB5Q86YW7 130 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 NEURL2Q9BR09 285 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 SRSF8Q9BRL6 282 aaKnown RBP9.94□□□□□ -0.82
RTN3-213ENST00000543552 COMMD5Q9GZQ3 224 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 AUNIPQ9H7T9 357 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 EDA2RQ9HAV5 297 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 IFT46Q9NQC8 304 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 CCL28Q9NRJ3 127 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 THYN1Q9P016 225 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 CEPT1Q9Y6K0 416 aa9.94□□□□□ -0.82
RTN3-213ENST00000543552 HPRT1P00492 218 aa9.93□□□□□ -0.82
RTN3-213ENST00000543552 CLEC2LP0C7M8 214 aa9.93□□□□□ -0.82
RTN3-213ENST00000543552 AREGP15514 252 aa9.93□□□□□ -0.82
RTN3-213ENST00000543552 CTRB1P17538 263 aa9.93□□□□□ -0.82
RTN3-213ENST00000543552 FXYD4P59646 89 aa9.93□□□□□ -0.82
RTN3-213ENST00000543552 GUCA2BQ16661 112 aa9.93□□□□□ -0.82
RTN3-213ENST00000543552 KLK9Q2XQG4 91 aa9.93□□□□□ -0.82
RTN3-213ENST00000543552 DEFB114Q30KQ6 69 aa9.93□□□□□ -0.82
RTN3-213ENST00000543552 KCTD21Q4G0X4 260 aa9.93□□□□□ -0.82
RTN3-213ENST00000543552 CTRB2Q6GPI1 263 aa9.93□□□□□ -0.82
RTN3-213ENST00000543552 THOC7Q6I9Y2 204 aaKnown RBP9.93□□□□□ -0.82
RTN3-213ENST00000543552 SLC16A13Q7RTY0 426 aa9.93□□□□□ -0.82
RTN3-213ENST00000543552 GVQW1Q8N7I0 195 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms