RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 C3orf85A0A1B0GTC6 90 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 A0A1W2PP55 124 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 HRKO00198 91 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 NKX2-8O15522 239 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 CRXO43186 299 aaPredicted RBP7.94□□□□□ -1.14
CLIP1-214ENST00000540539 CER1O95813 267 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 REG1BP48304 166 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 RPS15AP62244 130 aaKnown RBP7.94□□□□□ -1.14
CLIP1-214ENST00000540539 NMSQ5H8A3 153 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 EMC4Q5J8M3 183 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 C6orf201Q7Z4U5 140 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 YRDCQ86U90 279 aaKnown RBP7.94□□□□□ -1.14
CLIP1-214ENST00000540539 BPIFA4PQ86YQ2 179 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 ZNF695Q8IW36 515 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 TUSC5Q8IXB3 177 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 OCC1Q8TAD7 63 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 NAT6Q93015 286 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 PKIBQ9C010 78 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 SH2D2AQ9NP31 389 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 GABRG2P18507 467 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 PDCD1Q15116 288 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 RPEL1Q2QD12 228 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 SHISA6Q6ZSJ9 500 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 SH2D6Q7Z4S9 175 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 CA13Q8N1Q1 262 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 TMEM251Q8N6I4 163 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 OR2T6Q8NHC8 308 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 KCNK17Q96T54 332 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 OR2D2Q9H210 308 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 PPDPFQ9H3Y8 114 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 LHFPL6Q9Y693 200 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 LINC00312Q9Y6C7 94 aa7.94□□□□□ -1.14
CLIP1-214ENST00000540539 SLC16A7O60669 478 aa7.93□□□□□ -1.14
CLIP1-214ENST00000540539 NEURL1O76050 574 aa7.93□□□□□ -1.14
CLIP1-214ENST00000540539 GNG3P63215 75 aa7.93□□□□□ -1.14
CLIP1-214ENST00000540539 ETDBQ3ZM63 59 aa7.93□□□□□ -1.14
CLIP1-214ENST00000540539 SPEM1Q8N4L4 309 aa7.93□□□□□ -1.14
CLIP1-214ENST00000540539 TTC9CQ8N5M4 171 aa7.93□□□□□ -1.14
CLIP1-214ENST00000540539 C20orf78Q9BR46 151 aa7.93□□□□□ -1.14
CLIP1-214ENST00000540539 CDIP1Q9H305 208 aa7.93□□□□□ -1.14
CLIP1-214ENST00000540539 HRASLS2Q9NWW9 162 aa7.93□□□□□ -1.14
CLIP1-214ENST00000540539 C1RLQ9NZP8 487 aa7.93□□□□□ -1.14
CLIP1-214ENST00000540539 CYSLTR1Q9Y271 337 aa7.93□□□□□ -1.14
CLIP1-214ENST00000540539 NCOA6Q14686 2063 aaPredicted RBP7.93□□□□□ -1.14
CLIP1-214ENST00000540539 H3BMH7 237 aa7.93□□□□□ -1.14
CLIP1-214ENST00000540539 IL11P20809 199 aa7.93□□□□□ -1.14
CLIP1-214ENST00000540539 FCGR2BP31994 310 aaPredicted RBP7.93□□□□□ -1.14
CLIP1-214ENST00000540539 SLC35B1P78383 322 aa7.93□□□□□ -1.14
CLIP1-214ENST00000540539 DHRS13Q6UX07 377 aa7.93□□□□□ -1.14
CLIP1-214ENST00000540539 TAF15Q92804 592 aaKnown RBP eCLIP7.93□□□□□ -1.14
CLIP1-214ENST00000540539 OR4C12Q96R67 309 aa7.93□□□□□ -1.14
CLIP1-214ENST00000540539 A0A087WX48 190 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 IGLV1-36A0A0B4J1U3 117 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 ZNF816-ZNF321PA0A0X1KG74 233 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 UBE2L5PA0A1B0GUS4 154 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 NPIPB5A8MRT5 1133 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 K7EN84 100 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 ASAH2BP0C7U1 165 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 COX8AP10176 69 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 DEFA4P12838 97 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 CTLA4P16410 223 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 F2RP25116 425 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 PEBP1P30086 187 aaKnown RBP7.92□□□□□ -1.14
CLIP1-214ENST00000540539 DMRTC1Q5HYR2 192 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 FAM120AOSQ5T036 256 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 RNASEKQ6P5S7 137 aaKnown RBP7.92□□□□□ -1.14
CLIP1-214ENST00000540539 C1QL2Q7Z5L3 287 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 PP6455Q8WZ26 134 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 ARPC1AQ92747 370 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 RERGQ96A58 199 aaPredicted RBP7.92□□□□□ -1.14
CLIP1-214ENST00000540539 VGLL1Q99990 258 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 TM2D2Q9BX73 214 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 VCX2Q9H322 139 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 TECRQ9NZ01 308 aaKnown RBP7.92□□□□□ -1.14
CLIP1-214ENST00000540539 UBE2J1Q9Y385 318 aaPredicted RBP7.92□□□□□ -1.14
CLIP1-214ENST00000540539 LOC102723996A0A087X1L8 192 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 IGKV1-8A0A0C4DH67 115 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 LIPT2A6NK58 231 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 SYS1-DBNDD2H3BUS1 97 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 CX3CL1P78423 397 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 EIF3IQ13347 325 aaKnown RBP7.92□□□□□ -1.14
CLIP1-214ENST00000540539 TRIP6Q15654 476 aaKnown RBP7.92□□□□□ -1.14
CLIP1-214ENST00000540539 TMEM52BQ4KMG9 183 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 SAMD5Q5TGI4 173 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 LINC00173Q6ZV60 143 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 FAM131CQ96AQ9 280 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 GGTLC1Q9BX51 225 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 MS4A6AQ9H2W1 248 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 GCM1Q9NP62 436 aa7.92□□□□□ -1.14
CLIP1-214ENST00000540539 PTRH2Q9Y3E5 179 aaKnown RBP7.92□□□□□ -1.14
CLIP1-214ENST00000540539 A0A1W2PPV9 198 aa7.91□□□□□ -1.14
CLIP1-214ENST00000540539 DXOO77932 396 aaKnown RBP7.91□□□□□ -1.14
CLIP1-214ENST00000540539 HLA-DQA1P01909 254 aa7.91□□□□□ -1.14
CLIP1-214ENST00000540539 NHLRC4P0CG21 123 aaPredicted RBP7.91□□□□□ -1.14
CLIP1-214ENST00000540539 VDAC2P45880 294 aaPredicted RBP7.91□□□□□ -1.14
CLIP1-214ENST00000540539 CXCL12P48061 93 aa7.91□□□□□ -1.14
CLIP1-214ENST00000540539 MGAT2Q10469 447 aa7.91□□□□□ -1.14
CLIP1-214ENST00000540539 ZIC1Q15915 447 aa7.91□□□□□ -1.14
CLIP1-214ENST00000540539 C5orf47Q569G3 176 aa7.91□□□□□ -1.14
CLIP1-214ENST00000540539 FHL5Q5TD97 284 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms