RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 DIDO1Q9BTC0 2240 aaKnown RBP8.93□□□□□ -0.98
CLIP1-213ENST00000540338 IGLV3-9A0A075B6K5 115 aa8.93□□□□□ -0.98
CLIP1-213ENST00000540338 B9A039 149 aa8.93□□□□□ -0.98
CLIP1-213ENST00000540338 PDE6DO43924 150 aa8.93□□□□□ -0.98
CLIP1-213ENST00000540338 CNIH1O95406 144 aa8.93□□□□□ -0.98
CLIP1-213ENST00000540338 CXorf1O96002 111 aa8.93□□□□□ -0.98
CLIP1-213ENST00000540338 GATA4P43694 442 aa8.93□□□□□ -0.98
CLIP1-213ENST00000540338 C4orf17Q53FE4 359 aa8.93□□□□□ -0.98
CLIP1-213ENST00000540338 MIC13Q5XKP0 118 aa8.93□□□□□ -0.98
CLIP1-213ENST00000540338 SPSB3Q6PJ21 355 aa8.93□□□□□ -0.98
CLIP1-213ENST00000540338 OR10A7Q8NGE5 316 aa8.93□□□□□ -0.98
CLIP1-213ENST00000540338 PKDREJQ9NTG1 2253 aa8.93□□□□□ -0.98
CLIP1-213ENST00000540338 AP4M1O00189 453 aa8.93□□□□□ -0.98
CLIP1-213ENST00000540338 OPRK1P41145 380 aa8.93□□□□□ -0.98
CLIP1-213ENST00000540338 FAM78BQ5VT40 261 aa8.93□□□□□ -0.98
CLIP1-213ENST00000540338 RPEQ96AT9 228 aa8.93□□□□□ -0.98
CLIP1-213ENST00000540338 IGHV1-69-2A0A0G2JMI3 117 aa8.93□□□□□ -0.98
CLIP1-213ENST00000540338 CXorf65A6NEN9 183 aa8.93□□□□□ -0.98
CLIP1-213ENST00000540338 DPRXA6NFQ7 191 aa8.93□□□□□ -0.98
CLIP1-213ENST00000540338 COX7A1P24310 79 aa8.93□□□□□ -0.98
CLIP1-213ENST00000540338 GALR1P47211 349 aa8.93□□□□□ -0.98
CLIP1-213ENST00000540338 RAB1CQ92928 201 aa8.93□□□□□ -0.98
CLIP1-213ENST00000540338 TMPRSS5Q9H3S3 457 aa8.93□□□□□ -0.98
CLIP1-213ENST00000540338 C15orf65H3BRN8 121 aa8.92□□□□□ -0.98
CLIP1-213ENST00000540338 PPIHO43447 177 aaKnown RBP8.92□□□□□ -0.98
CLIP1-213ENST00000540338 OR5G3P0C626 314 aa8.92□□□□□ -0.98
CLIP1-213ENST00000540338 CT45A1Q5HYN5 189 aa8.92□□□□□ -0.98
CLIP1-213ENST00000540338 OR52E5Q8NH55 327 aa8.92□□□□□ -0.98
CLIP1-213ENST00000540338 CT45A3Q8NHU0 189 aa8.92□□□□□ -0.98
CLIP1-213ENST00000540338 VKORC1Q9BQB6 163 aa8.92□□□□□ -0.98
CLIP1-213ENST00000540338 SERTAD4Q9NUC0 356 aa8.92□□□□□ -0.98
CLIP1-213ENST00000540338 BPIFB3P59826 476 aa8.92□□□□□ -0.98
CLIP1-213ENST00000540338 RPL8P62917 257 aaKnown RBP8.92□□□□□ -0.98
CLIP1-213ENST00000540338 OR4P4Q8NGL7 312 aa8.92□□□□□ -0.98
CLIP1-213ENST00000540338 TMEM186Q96B77 213 aa8.92□□□□□ -0.98
CLIP1-213ENST00000540338 ONECUT1Q9UBC0 465 aa8.92□□□□□ -0.98
CLIP1-213ENST00000540338 RPUSD1Q9UJJ7 312 aaKnown RBP8.92□□□□□ -0.98
CLIP1-213ENST00000540338 TMEM250H0YL14 139 aa8.92□□□□□ -0.98
CLIP1-213ENST00000540338 COX7A2P2O60397 106 aa8.92□□□□□ -0.98
CLIP1-213ENST00000540338 MC5RP33032 325 aa8.92□□□□□ -0.98
CLIP1-213ENST00000540338 HES1Q14469 280 aa8.92□□□□□ -0.98
CLIP1-213ENST00000540338 ZNF788Q6ZQV5 615 aa8.92□□□□□ -0.98
CLIP1-213ENST00000540338 LINC01560Q8TB33 94 aa8.92□□□□□ -0.98
CLIP1-213ENST00000540338 GAFA1Q96PS6 74 aa8.92□□□□□ -0.98
CLIP1-213ENST00000540338 COLCA2A8K830 154 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 DEFA4P12838 97 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 HNF1AP20823 631 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 LGALS4P56470 323 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 ADIPOQQ15848 244 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 OR9G1Q8NH87 305 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 RNASE6Q93091 150 aaKnown RBP8.91□□□□□ -0.98
CLIP1-213ENST00000540338 PARD6GQ9BYG4 376 aaPredicted RBP8.91□□□□□ -0.98
CLIP1-213ENST00000540338 TECRQ9NZ01 308 aaKnown RBP8.91□□□□□ -0.98
CLIP1-213ENST00000540338 INSIG2Q9Y5U4 225 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 C15orf61A6NNL5 157 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 SLC31A2O15432 143 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 CLN5O75503 358 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 CA2P00918 260 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 CCL3L1P16619 93 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 OR8B3Q8NGG8 313 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 OSR1Q8TAX0 266 aaPredicted RBP8.91□□□□□ -0.98
CLIP1-213ENST00000540338 ANAPC16Q96DE5 110 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 OR8B2Q96RD0 313 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 IFI27L2Q9H2X8 130 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 NIT2Q9NQR4 276 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 WDR83OSQ9Y284 106 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 WASHC3Q9Y3C0 194 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 NBASA2RRP1 2371 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 TIGITQ495A1 244 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 ACSM6Q6P461 480 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 RPP25LQ8N5L8 163 aaKnown RBP8.91□□□□□ -0.98
CLIP1-213ENST00000540338 OR4C13Q8NGP0 309 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 WFIKKN1Q96NZ8 548 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 NCOR1P1Q9H4R4 102 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 TMEM167BQ9NRX6 74 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 AMMECR1Q9Y4X0 333 aaPredicted RBP8.91□□□□□ -0.98
CLIP1-213ENST00000540338 MUC6Q6W4X9 2439 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 ATP5IP56385 69 aaPredicted RBP8.91□□□□□ -0.98
CLIP1-213ENST00000540338 RAB4BP61018 213 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 KLRB1Q12918 225 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 ETFRF1Q6IPR1 90 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 MUC15Q8N387 334 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 TXNDC17Q9BRA2 123 aa8.91□□□□□ -0.98
CLIP1-213ENST00000540338 A0A087WWC5 75 aa8.9□□□□□ -0.98
CLIP1-213ENST00000540338 DVL1O14640 695 aa8.9□□□□□ -0.98
CLIP1-213ENST00000540338 ITGB1BP1O14713 200 aa8.9□□□□□ -0.98
CLIP1-213ENST00000540338 IGLV2-14P01704 120 aa8.9□□□□□ -0.98
CLIP1-213ENST00000540338 USF1P22415 310 aaPredicted RBP8.9□□□□□ -0.98
CLIP1-213ENST00000540338 OR5B3Q8NH48 314 aa8.9□□□□□ -0.98
CLIP1-213ENST00000540338 C11orf1Q9H5F2 150 aa8.9□□□□□ -0.98
CLIP1-213ENST00000540338 KIAA1549Q9HCM3 1950 aa8.9□□□□□ -0.98
CLIP1-213ENST00000540338 A0A0C4DFX4 3053 aa8.9□□□□□ -0.98
CLIP1-213ENST00000540338 SCGB2A1O75556 95 aa8.9□□□□□ -0.98
CLIP1-213ENST00000540338 CHRNB4P30926 498 aa8.9□□□□□ -0.98
CLIP1-213ENST00000540338 S100A12P80511 92 aa8.9□□□□□ -0.98
CLIP1-213ENST00000540338 PSG5Q15238 335 aa8.9□□□□□ -0.98
CLIP1-213ENST00000540338 PDZD11Q5EBL8 140 aa8.9□□□□□ -0.98
CLIP1-213ENST00000540338 SEBOXQ9HB31 216 aaPredicted RBP8.9□□□□□ -0.98
CLIP1-213ENST00000540338 ZGRF1Q86YA3 2104 aa8.9□□□□□ -0.98
CLIP1-213ENST00000540338 OR10J1P30954 320 aa8.9□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms