RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 CD300LFQ8TDQ1 290 aa9.88□□□□□ -0.83
CLSTN3-208ENST00000538933 CAPSLQ8WWF8 208 aa9.88□□□□□ -0.83
CLSTN3-208ENST00000538933 TMEM230Q96A57 120 aa9.88□□□□□ -0.83
CLSTN3-208ENST00000538933 WASHC3Q9Y3C0 194 aa9.88□□□□□ -0.83
CLSTN3-208ENST00000538933 PIGBOS1A0A0B4J2F0 54 aa9.87□□□□□ -0.83
CLSTN3-208ENST00000538933 LINC00473A8K010 186 aa9.87□□□□□ -0.83
CLSTN3-208ENST00000538933 CREBL2O60519 120 aaPredicted RBP9.87□□□□□ -0.83
CLSTN3-208ENST00000538933 SFT2D2O95562 160 aa9.87□□□□□ -0.83
CLSTN3-208ENST00000538933 PF4V1P10720 104 aa9.87□□□□□ -0.83
CLSTN3-208ENST00000538933 RPL30P62888 115 aaKnown RBP9.87□□□□□ -0.83
CLSTN3-208ENST00000538933 SRPXP78539 464 aa9.87□□□□□ -0.83
CLSTN3-208ENST00000538933 SP6Q3SY56 376 aa9.87□□□□□ -0.83
CLSTN3-208ENST00000538933 PDPNQ86YL7 162 aa9.87□□□□□ -0.83
CLSTN3-208ENST00000538933 ZNF695Q8IW36 515 aa9.87□□□□□ -0.83
CLSTN3-208ENST00000538933 LINC00482Q8N8I6 264 aa9.87□□□□□ -0.83
CLSTN3-208ENST00000538933 ZNF383Q8NA42 475 aa9.87□□□□□ -0.83
CLSTN3-208ENST00000538933 UXS1Q8NBZ7 420 aa9.87□□□□□ -0.83
CLSTN3-208ENST00000538933 OR5AU1Q8NGC0 362 aa9.87□□□□□ -0.83
CLSTN3-208ENST00000538933 COQ8AQ8NI60 647 aa9.87□□□□□ -0.83
CLSTN3-208ENST00000538933 SEC22CQ9BRL7 303 aa9.87□□□□□ -0.83
CLSTN3-208ENST00000538933 ALX4Q9H161 411 aaPredicted RBP9.87□□□□□ -0.83
CLSTN3-208ENST00000538933 A0A1W2PPI3 338 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 C9orf170A2RU37 121 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 VGLL3A8MV65 326 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 H0YJW9 148 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 SHOXO15266 292 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 SSNA1O43805 119 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 PROP1O75360 226 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 ATG12O94817 140 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 CRYZL1O95825 349 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 PF4P02776 101 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 IL5P05113 134 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 FAM106CPP0CH98 169 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 LPAR6P43657 344 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 LINC00205P59089 165 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 ERVK-16P61578 105 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 RPS16P62249 146 aaKnown RBP9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 BLCAPP62952 87 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 DHRS2Q13268 280 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 TATDN3Q17R31 274 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 LDLRAD2Q5SZI1 272 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 LGI3Q8N145 548 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 OR52B4Q8NGK2 314 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 FLYWCH2Q96CP2 140 aaKnown RBP9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 GALNT14Q96FL9 552 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 TP53RKQ96S44 253 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 PHB2Q99623 299 aa9.86□□□□□ -0.83
CLSTN3-208ENST00000538933 A6NDX4 124 aa9.85□□□□□ -0.83
CLSTN3-208ENST00000538933 HPRT1P00492 218 aa9.85□□□□□ -0.83
CLSTN3-208ENST00000538933 IGKV1D-33P01593 117 aa9.85□□□□□ -0.83
CLSTN3-208ENST00000538933 IGKV1-33P01594 117 aa9.85□□□□□ -0.83
CLSTN3-208ENST00000538933 SNRNP70P08621 437 aaKnown RBP9.85□□□□□ -0.83
CLSTN3-208ENST00000538933 RPA2P15927 270 aa9.85□□□□□ -0.83
CLSTN3-208ENST00000538933 CD1BP29016 333 aa9.85□□□□□ -0.83
CLSTN3-208ENST00000538933 MECP2P51608 486 aaKnown RBP9.85□□□□□ -0.83
CLSTN3-208ENST00000538933 AKR1C2P52895 323 aa9.85□□□□□ -0.83
CLSTN3-208ENST00000538933 EIF4EBP1Q13541 118 aaPredicted RBP9.85□□□□□ -0.83
CLSTN3-208ENST00000538933 TMEM95Q3KNT9 176 aa9.85□□□□□ -0.83
CLSTN3-208ENST00000538933 TMEM268Q5VZI3 342 aa9.85□□□□□ -0.83
CLSTN3-208ENST00000538933 DYNAPQ8N1N2 210 aa9.85□□□□□ -0.83
CLSTN3-208ENST00000538933 OR5AN1Q8NGI8 311 aa9.85□□□□□ -0.83
CLSTN3-208ENST00000538933 OR2T10Q8NGZ9 312 aa9.85□□□□□ -0.83
CLSTN3-208ENST00000538933 ZNF431Q8TF32 576 aaPredicted RBP9.85□□□□□ -0.83
CLSTN3-208ENST00000538933 HARBI1Q96MB7 349 aa9.85□□□□□ -0.83
CLSTN3-208ENST00000538933 AIFM2Q9BRQ8 373 aa9.85□□□□□ -0.83
CLSTN3-208ENST00000538933 PRSS22Q9GZN4 317 aa9.85□□□□□ -0.83
CLSTN3-208ENST00000538933 TMEM222Q9H0R3 208 aa9.85□□□□□ -0.83
CLSTN3-208ENST00000538933 SNRPGP15A8MWD9 76 aa9.84□□□□□ -0.83
CLSTN3-208ENST00000538933 RBFOX2O43251 390 aaKnown RBP eCLIP9.84□□□□□ -0.83
CLSTN3-208ENST00000538933 MOSP00540 346 aa9.84□□□□□ -0.83
CLSTN3-208ENST00000538933 HRASP01112 189 aa9.84□□□□□ -0.83
CLSTN3-208ENST00000538933 TMEM11P17152 192 aa9.84□□□□□ -0.83
CLSTN3-208ENST00000538933 UCP1P25874 307 aa9.84□□□□□ -0.83
CLSTN3-208ENST00000538933 SUPT4H1P63272 117 aaKnown RBP9.84□□□□□ -0.83
CLSTN3-208ENST00000538933 HNF4GQ14541 408 aa9.84□□□□□ -0.83
CLSTN3-208ENST00000538933 TMEM187Q14656 261 aa9.84□□□□□ -0.83
CLSTN3-208ENST00000538933 C12orf45Q8N5I9 185 aaPredicted RBP9.84□□□□□ -0.83
CLSTN3-208ENST00000538933 DMBX1Q8NFW5 382 aa9.84□□□□□ -0.83
CLSTN3-208ENST00000538933 OSR1Q8TAX0 266 aaPredicted RBP9.84□□□□□ -0.83
CLSTN3-208ENST00000538933 DDB2Q92466 427 aa9.84□□□□□ -0.83
CLSTN3-208ENST00000538933 RRNAD1Q96FB5 475 aaKnown RBP9.84□□□□□ -0.83
CLSTN3-208ENST00000538933 ASCL2Q99929 193 aa9.84□□□□□ -0.83
CLSTN3-208ENST00000538933 FAM212BQ9NTI7 297 aaPredicted RBP9.84□□□□□ -0.83
CLSTN3-208ENST00000538933 PRR13Q9NZ81 148 aa9.84□□□□□ -0.83
CLSTN3-208ENST00000538933 COMMD9Q9P000 198 aa9.84□□□□□ -0.83
CLSTN3-208ENST00000538933 KIAA1456Q9P272 454 aa9.84□□□□□ -0.83
CLSTN3-208ENST00000538933 PITPNC1Q9UKF7 332 aa9.84□□□□□ -0.83
CLSTN3-208ENST00000538933 TCF19Q9Y242 345 aa9.84□□□□□ -0.83
CLSTN3-208ENST00000538933 TSSC4Q9Y5U2 329 aaPredicted RBP9.84□□□□□ -0.83
CLSTN3-208ENST00000538933 ALG5Q9Y673 324 aa9.84□□□□□ -0.83
CLSTN3-208ENST00000538933 RAMP3O60896 148 aa9.83□□□□□ -0.84
CLSTN3-208ENST00000538933 S1PR2O95136 353 aa9.83□□□□□ -0.84
CLSTN3-208ENST00000538933 IFNA21P01568 189 aa9.83□□□□□ -0.84
CLSTN3-208ENST00000538933 NQO2P16083 231 aa9.83□□□□□ -0.84
CLSTN3-208ENST00000538933 CD24P25063 80 aa9.83□□□□□ -0.84
CLSTN3-208ENST00000538933 PLGLAQ15195 96 aa9.83□□□□□ -0.84
CLSTN3-208ENST00000538933 VMA21Q3ZAQ7 101 aa9.83□□□□□ -0.84
CLSTN3-208ENST00000538933 LIN54Q6MZP7 749 aa9.83□□□□□ -0.84
CLSTN3-208ENST00000538933 ETV3LQ6ZN32 361 aa9.83□□□□□ -0.84
CLSTN3-208ENST00000538933 SSX9Q7RTT3 188 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms