RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 SFRP2Q96HF1 295 aa11.74□□□□□ -0.53
LIG1-203ENST00000536218 PSMG3Q9BT73 122 aaPredicted RBP11.74□□□□□ -0.53
LIG1-203ENST00000536218 CRIM1Q9NZV1 1036 aa11.74□□□□□ -0.53
LIG1-203ENST00000536218 SPRR3Q9UBC9 169 aa11.74□□□□□ -0.53
LIG1-203ENST00000536218 WASHC3Q9Y3C0 194 aa11.74□□□□□ -0.53
LIG1-203ENST00000536218 GAGE12BA1L429 117 aa11.74□□□□□ -0.53
LIG1-203ENST00000536218 RBFOX2O43251 390 aaKnown RBP eCLIP11.74□□□□□ -0.532e-6■□□□□ 9.8
LIG1-203ENST00000536218 FOXL1Q12952 345 aa11.74□□□□□ -0.53
LIG1-203ENST00000536218 LRRC75BQ2VPJ9 315 aa11.74□□□□□ -0.53
LIG1-203ENST00000536218 HLA-DRB5Q30154 266 aa11.74□□□□□ -0.53
LIG1-203ENST00000536218 HAPLN4Q86UW8 402 aa11.74□□□□□ -0.53
LIG1-203ENST00000536218 OR52L2PQ8NGH6 319 aa11.74□□□□□ -0.53
LIG1-203ENST00000536218 TMEM204Q9BSN7 226 aa11.74□□□□□ -0.53
LIG1-203ENST00000536218 DSPP15924 2871 aaKnown RBP11.73□□□□□ -0.53
LIG1-203ENST00000536218 IGLC7A0M8Q6 106 aa11.73□□□□□ -0.53
LIG1-203ENST00000536218 SLC17A3O00476 420 aa11.73□□□□□ -0.53
LIG1-203ENST00000536218 YPEL3P61236 119 aaPredicted RBP11.73□□□□□ -0.53
LIG1-203ENST00000536218 HBG1P69891 147 aa11.73□□□□□ -0.53
LIG1-203ENST00000536218 HBG2P69892 147 aa11.73□□□□□ -0.53
LIG1-203ENST00000536218 OR10G9Q8NGN4 311 aa11.73□□□□□ -0.53
LIG1-203ENST00000536218 OR10G7Q8NGN6 311 aa11.73□□□□□ -0.53
LIG1-203ENST00000536218 C3orf80F5H4A9 247 aa11.73□□□□□ -0.53
LIG1-203ENST00000536218 RPS16P62249 146 aaKnown RBP11.73□□□□□ -0.53
LIG1-203ENST00000536218 STUMQ69YW2 141 aa11.73□□□□□ -0.53
LIG1-203ENST00000536218 ACSM6Q6P461 480 aa11.73□□□□□ -0.53
LIG1-203ENST00000536218 PIP4P1Q86T03 277 aa11.73□□□□□ -0.53
LIG1-203ENST00000536218 TAF15Q92804 592 aaKnown RBP eCLIP11.73□□□□□ -0.536e-7■■■■□ 23.8
LIG1-203ENST00000536218 WDR61Q9GZS3 305 aaKnown RBP11.73□□□□□ -0.53
LIG1-203ENST00000536218 GTF3C1Q12789 2109 aa11.73□□□□□ -0.53
LIG1-203ENST00000536218 ZNF318Q5VUA4 2279 aa11.73□□□□□ -0.53
LIG1-203ENST00000536218 TOX4O94842 621 aa11.73□□□□□ -0.53
LIG1-203ENST00000536218 IGFBP7Q16270 282 aa11.73□□□□□ -0.53
LIG1-203ENST00000536218 KRTCAP3Q53RY4 240 aa11.73□□□□□ -0.53
LIG1-203ENST00000536218 MPV17L2Q567V2 206 aa11.73□□□□□ -0.53
LIG1-203ENST00000536218 MRPL21Q7Z2W9 205 aaKnown RBP11.73□□□□□ -0.53
LIG1-203ENST00000536218 ZDHHC23Q8IYP9 409 aa11.73□□□□□ -0.53
LIG1-203ENST00000536218 OR5P3Q8WZ94 311 aa11.73□□□□□ -0.53
LIG1-203ENST00000536218 BORCS7Q96B45 105 aa11.73□□□□□ -0.53
LIG1-203ENST00000536218 ABHD14BQ96IU4 210 aa11.73□□□□□ -0.53
LIG1-203ENST00000536218 CCL28Q9NRJ3 127 aa11.73□□□□□ -0.53
LIG1-203ENST00000536218 IGHV2-26A0A0B4J1V2 119 aa11.72□□□□□ -0.53
LIG1-203ENST00000536218 SLC22A20A6NK97 555 aa11.72□□□□□ -0.53
LIG1-203ENST00000536218 NBEAP1P0C6P0 100 aa11.72□□□□□ -0.53
LIG1-203ENST00000536218 SPATA46Q5T0L3 261 aa11.72□□□□□ -0.53
LIG1-203ENST00000536218 Q6ZSR3 168 aa11.72□□□□□ -0.53
LIG1-203ENST00000536218 LHFPL2Q6ZUX7 228 aa11.72□□□□□ -0.53
LIG1-203ENST00000536218 ZNF295-AS1Q8N0V1 137 aa11.72□□□□□ -0.53
LIG1-203ENST00000536218 UHRF2Q96PU4 802 aa11.72□□□□□ -0.53
LIG1-203ENST00000536218 REPIN1Q9BWE0 567 aaKnown RBP11.72□□□□□ -0.53
LIG1-203ENST00000536218 OR7C1O76099 320 aaPredicted RBP11.72□□□□□ -0.53
LIG1-203ENST00000536218 ATP5G3P48201 142 aa11.72□□□□□ -0.53
LIG1-203ENST00000536218 GPM6AP51674 278 aa11.72□□□□□ -0.53
LIG1-203ENST00000536218 PLP2Q04941 152 aa11.72□□□□□ -0.53
LIG1-203ENST00000536218 Q56UQ5 140 aa11.72□□□□□ -0.53
LIG1-203ENST00000536218 TMEM178AQ8NBL3 297 aa11.72□□□□□ -0.53
LIG1-203ENST00000536218 RCHY1Q96PM5 261 aa11.72□□□□□ -0.53
LIG1-203ENST00000536218 RAB40CQ96S21 281 aa11.72□□□□□ -0.53
LIG1-203ENST00000536218 C1QTNF5Q9BXJ0 243 aa11.72□□□□□ -0.53
LIG1-203ENST00000536218 LINC00470Q9BZP3 86 aa11.72□□□□□ -0.53
LIG1-203ENST00000536218 MGAQ8IWI9 3026 aa11.72□□□□□ -0.53
LIG1-203ENST00000536218 SERPINE2P07093 398 aa11.71□□□□□ -0.53
LIG1-203ENST00000536218 ESDP10768 282 aa11.71□□□□□ -0.53
LIG1-203ENST00000536218 FUT6P51993 359 aa11.71□□□□□ -0.53
LIG1-203ENST00000536218 GNB1P62873 340 aa11.71□□□□□ -0.53
LIG1-203ENST00000536218 OSR2Q8N2R0 312 aa11.71□□□□□ -0.53
LIG1-203ENST00000536218 ZNF611Q8N823 705 aa11.71□□□□□ -0.53
LIG1-203ENST00000536218 CACNG5Q9UF02 275 aa11.71□□□□□ -0.53
LIG1-203ENST00000536218 CTXND1A0A1B0GTU2 59 aa11.71□□□□□ -0.53
LIG1-203ENST00000536218 HSPB6O14558 160 aa11.71□□□□□ -0.53
LIG1-203ENST00000536218 MLNRO43193 412 aa11.71□□□□□ -0.53
LIG1-203ENST00000536218 RNPS1Q15287 305 aaKnown RBP11.71□□□□□ -0.53
LIG1-203ENST00000536218 SMIM21Q3B7S5 101 aa11.71□□□□□ -0.53
LIG1-203ENST00000536218 KRTAP27-1Q3LI81 207 aa11.71□□□□□ -0.53
LIG1-203ENST00000536218 OR10G8Q8NGN5 311 aa11.71□□□□□ -0.53
LIG1-203ENST00000536218 NAT8BQ9UHF3 227 aa11.71□□□□□ -0.53
LIG1-203ENST00000536218 IGKV1D-13A0A0B4J2D9 117 aa11.71□□□□□ -0.54
LIG1-203ENST00000536218 IGHV3-64DA0A0J9YX35 117 aa11.71□□□□□ -0.54
LIG1-203ENST00000536218 CORTO00230 105 aa11.71□□□□□ -0.54
LIG1-203ENST00000536218 SYNGR2O43760 224 aa11.71□□□□□ -0.54
LIG1-203ENST00000536218 IGKV1-13P0DP09 117 aa11.71□□□□□ -0.54
LIG1-203ENST00000536218 SLC35B1P78383 322 aa11.71□□□□□ -0.54
LIG1-203ENST00000536218 HTD2P86397 168 aa11.71□□□□□ -0.54
LIG1-203ENST00000536218 OR8B8Q15620 311 aa11.71□□□□□ -0.54
LIG1-203ENST00000536218 DEFB109BQ30KR1 87 aa11.71□□□□□ -0.54
LIG1-203ENST00000536218 TMEM42Q69YG0 159 aa11.71□□□□□ -0.54
LIG1-203ENST00000536218 SARAFQ96BY9 339 aa11.71□□□□□ -0.54
LIG1-203ENST00000536218 CDC42EP3Q9UKI2 254 aa11.71□□□□□ -0.54
LIG1-203ENST00000536218 SIRPB1O00241 398 aa11.7□□□□□ -0.54
LIG1-203ENST00000536218 GNG7O60262 68 aa11.7□□□□□ -0.54
LIG1-203ENST00000536218 RHOGP84095 191 aa11.7□□□□□ -0.54
LIG1-203ENST00000536218 SLC38A11Q08AI6 406 aa11.7□□□□□ -0.54
LIG1-203ENST00000536218 MALLQ13021 153 aa11.7□□□□□ -0.54
LIG1-203ENST00000536218 PRDM14Q9GZV8 571 aa11.7□□□□□ -0.54
LIG1-203ENST00000536218 MUC6Q6W4X9 2439 aa11.7□□□□□ -0.54
LIG1-203ENST00000536218 A0A1W2PS18 150 aa11.7□□□□□ -0.54
LIG1-203ENST00000536218 CD300LBA8K4G0 201 aa11.7□□□□□ -0.54
LIG1-203ENST00000536218 NUDT3O95989 172 aa11.7□□□□□ -0.54
LIG1-203ENST00000536218 PRRX1P54821 245 aa11.7□□□□□ -0.54
LIG1-203ENST00000536218 Q6ZRM9 215 aa11.7□□□□□ -0.54
LIG1-203ENST00000536218 MED12LQ86YW9 2145 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms