RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 PDLIM3Q53GG5 364 aaPredicted RBP16.11■□□□□ 0.17
PCF11-203ENST00000530304 PCNX2A6NKB5 2137 aa16.1■□□□□ 0.17
PCF11-203ENST00000530304 MGST3O14880 152 aa16.1■□□□□ 0.17
PCF11-203ENST00000530304 ARL14EPLP0DKL9 152 aa16.1■□□□□ 0.17
PCF11-203ENST00000530304 CD99P14209 185 aa16.1■□□□□ 0.17
PCF11-203ENST00000530304 LCN2P80188 198 aa16.1■□□□□ 0.17
PCF11-203ENST00000530304 CR1LQ2VPA4 569 aa16.1■□□□□ 0.17
PCF11-203ENST00000530304 ZNRF1Q8ND25 227 aa16.1■□□□□ 0.17
PCF11-203ENST00000530304 OPN3Q9H1Y3 402 aaPredicted RBP16.1■□□□□ 0.17
PCF11-203ENST00000530304 A0A087X0M5 115 aa16.1■□□□□ 0.17
PCF11-203ENST00000530304 A0A1B0GX30 115 aa16.1■□□□□ 0.17
PCF11-203ENST00000530304 PGPEP1LA6NFU8 196 aa16.1■□□□□ 0.17
PCF11-203ENST00000530304 F6UZH7 168 aa16.1■□□□□ 0.17
PCF11-203ENST00000530304 C1QTNF9P0C862 333 aa16.1■□□□□ 0.17
PCF11-203ENST00000530304 IL3RAP26951 378 aa16.1■□□□□ 0.17
PCF11-203ENST00000530304 TMPRSS3P57727 454 aa16.1■□□□□ 0.17
PCF11-203ENST00000530304 MSMPQ1L6U9 139 aa16.1■□□□□ 0.17
PCF11-203ENST00000530304 MIC13Q5XKP0 118 aa16.1■□□□□ 0.17
PCF11-203ENST00000530304 LRP11Q86VZ4 500 aa16.1■□□□□ 0.17
PCF11-203ENST00000530304 ZNF114Q8NC26 417 aa16.1■□□□□ 0.17
PCF11-203ENST00000530304 S1PR3Q99500 378 aa16.1■□□□□ 0.17
PCF11-203ENST00000530304 GGTLC1Q9BX51 225 aa16.1■□□□□ 0.17
PCF11-203ENST00000530304 IFI27L2Q9H2X8 130 aa16.1■□□□□ 0.17
PCF11-203ENST00000530304 ZNF71Q9NQZ8 489 aaPredicted RBP16.1■□□□□ 0.17
PCF11-203ENST00000530304 PXMP4Q9Y6I8 212 aa16.1■□□□□ 0.17
PCF11-203ENST00000530304 RBFOX2O43251 390 aaKnown RBP eCLIP16.09■□□□□ 0.17
PCF11-203ENST00000530304 GCSAMQ8N6F7 178 aa16.09■□□□□ 0.17
PCF11-203ENST00000530304 SARAFQ96BY9 339 aa16.09■□□□□ 0.17
PCF11-203ENST00000530304 TMEM140Q9NV12 185 aa16.09■□□□□ 0.17
PCF11-203ENST00000530304 TET2Q6N021 2002 aaPredicted RBP16.09■□□□□ 0.17
PCF11-203ENST00000530304 STAG3L2P0CL84 134 aa16.09■□□□□ 0.17
PCF11-203ENST00000530304 STAG3L3P0CL85 134 aa16.09■□□□□ 0.17
PCF11-203ENST00000530304 C1orf229Q6ZS94 237 aaPredicted RBP16.09■□□□□ 0.17
PCF11-203ENST00000530304 REC114Q7Z4M0 266 aa16.09■□□□□ 0.17
PCF11-203ENST00000530304 TNFSF13O75888 250 aa16.08■□□□□ 0.17
PCF11-203ENST00000530304 SPRNQ5BIV9 151 aa16.08■□□□□ 0.17
PCF11-203ENST00000530304 PPP1R35Q8TAP8 253 aa16.08■□□□□ 0.17
PCF11-203ENST00000530304 F2RL2O00254 374 aa16.08■□□□□ 0.16
PCF11-203ENST00000530304 UTF1Q5T230 341 aa16.08■□□□□ 0.16
PCF11-203ENST00000530304 FAM216AQ8WUB2 273 aa16.08■□□□□ 0.16
PCF11-203ENST00000530304 TMEM204Q9BSN7 226 aa16.08■□□□□ 0.16
PCF11-203ENST00000530304 A0A0U1RQK1 487 aa16.07■□□□□ 0.16
PCF11-203ENST00000530304 ZNF320A2RRD8 509 aa16.07■□□□□ 0.16
PCF11-203ENST00000530304 SLC31A2O15432 143 aa16.07■□□□□ 0.16
PCF11-203ENST00000530304 CXorf1O96002 111 aa16.07■□□□□ 0.16
PCF11-203ENST00000530304 BHLHA15Q7RTS1 189 aaPredicted RBP16.07■□□□□ 0.16
PCF11-203ENST00000530304 TMEM144Q7Z5S9 345 aa16.07■□□□□ 0.16
PCF11-203ENST00000530304 C1orf174Q8IYL3 243 aa16.07■□□□□ 0.16
PCF11-203ENST00000530304 STARD4Q96DR4 205 aa16.07■□□□□ 0.16
PCF11-203ENST00000530304 C1orf159Q96HA4 380 aa16.07■□□□□ 0.16
PCF11-203ENST00000530304 TCF19Q9Y242 345 aa16.07■□□□□ 0.16
PCF11-203ENST00000530304 TRBV20OR9-2A0A075B6H5 130 aa16.07■□□□□ 0.16
PCF11-203ENST00000530304 PAX1P15863 534 aa16.07■□□□□ 0.16
PCF11-203ENST00000530304 CNN1P51911 297 aaKnown RBP16.07■□□□□ 0.16
PCF11-203ENST00000530304 TRIP6Q15654 476 aaKnown RBP16.07■□□□□ 0.16
PCF11-203ENST00000530304 ALKBH2Q6NS38 261 aa16.07■□□□□ 0.16
PCF11-203ENST00000530304 LEAP2Q969E1 77 aa16.07■□□□□ 0.16
PCF11-203ENST00000530304 SFRP2Q96HF1 295 aa16.07■□□□□ 0.16
PCF11-203ENST00000530304 IMMP2LQ96T52 175 aa16.07■□□□□ 0.16
PCF11-203ENST00000530304 PROCRQ9UNN8 238 aa16.07■□□□□ 0.16
PCF11-203ENST00000530304 INTS1Q8N201 2190 aaKnown RBP16.07■□□□□ 0.16
PCF11-203ENST00000530304 CFAP47Q6ZTR5 3102 aa16.06■□□□□ 0.16
PCF11-203ENST00000530304 RPL15P61313 204 aaKnown RBP16.06■□□□□ 0.16
PCF11-203ENST00000530304 FOXL1Q12952 345 aa16.06■□□□□ 0.16
PCF11-203ENST00000530304 SSMEM1Q8WWF3 244 aa16.06■□□□□ 0.16
PCF11-203ENST00000530304 DDB2Q92466 427 aa16.06■□□□□ 0.16
PCF11-203ENST00000530304 NPVFQ9HCQ7 196 aa16.06■□□□□ 0.16
PCF11-203ENST00000530304 DKK4Q9UBT3 224 aa16.06■□□□□ 0.16
PCF11-203ENST00000530304 CACNA1GO43497 2377 aa16.06■□□□□ 0.16
PCF11-203ENST00000530304 CGAP01215 116 aa16.06■□□□□ 0.16
PCF11-203ENST00000530304 GCGP01275 180 aa16.06■□□□□ 0.16
PCF11-203ENST00000530304 CFHR2P36980 270 aa16.06■□□□□ 0.16
PCF11-203ENST00000530304 IGFL2Q6UWQ7 119 aa16.06■□□□□ 0.16
PCF11-203ENST00000530304 ZNF664Q8N3J9 261 aa16.06■□□□□ 0.16
PCF11-203ENST00000530304 OR2V2Q96R30 315 aa16.06■□□□□ 0.16
PCF11-203ENST00000530304 TXNDC17Q9BRA2 123 aa16.06■□□□□ 0.16
PCF11-203ENST00000530304 CALYQ9NYX4 217 aa16.06■□□□□ 0.16
PCF11-203ENST00000530304 LSM4Q9Y4Z0 139 aaKnown RBP16.06■□□□□ 0.16
PCF11-203ENST00000530304 TRAPPC1Q9Y5R8 145 aa16.06■□□□□ 0.16
PCF11-203ENST00000530304 SLC25A15Q9Y619 301 aa16.06■□□□□ 0.16
PCF11-203ENST00000530304 TRAV17A0A0B4J275 112 aa16.05■□□□□ 0.16
PCF11-203ENST00000530304 ZNF705GA8MUZ8 300 aaPredicted RBP16.05■□□□□ 0.16
PCF11-203ENST00000530304 MOGAT3Q86VF5 341 aa16.05■□□□□ 0.16
PCF11-203ENST00000530304 SGMS2Q8NHU3 365 aa16.05■□□□□ 0.16
PCF11-203ENST00000530304 TMEM18Q96B42 140 aa16.05■□□□□ 0.16
PCF11-203ENST00000530304 SCO2A0A1W2PP80 73 aa16.05■□□□□ 0.16
PCF11-203ENST00000530304 MKRN2OSH3BPM6 223 aa16.05■□□□□ 0.16
PCF11-203ENST00000530304 KIR2DS2P43631 304 aa16.05■□□□□ 0.16
PCF11-203ENST00000530304 TRGV8A0A0C4DH27 118 aa16.04■□□□□ 0.16
PCF11-203ENST00000530304 ARSJQ5FYB0 599 aaPredicted RBP16.04■□□□□ 0.16
PCF11-203ENST00000530304 OR4S2Q8NH73 311 aa16.04■□□□□ 0.16
PCF11-203ENST00000530304 C15orf61A6NNL5 157 aa16.04■□□□□ 0.16
PCF11-203ENST00000530304 AHRRA9YTQ3 701 aa16.04■□□□□ 0.16
PCF11-203ENST00000530304 IL6RP08887 468 aaPredicted RBP16.04■□□□□ 0.16
PCF11-203ENST00000530304 ZNF83P51522 516 aa16.04■□□□□ 0.16
PCF11-203ENST00000530304 BTF3L4Q96K17 158 aa16.04■□□□□ 0.16
PCF11-203ENST00000530304 SEPSECSQ9HD40 501 aaKnown RBP16.04■□□□□ 0.16
PCF11-203ENST00000530304 YTHDF2Q9Y5A9 579 aaKnown RBP16.04■□□□□ 0.16
PCF11-203ENST00000530304 MDFIC2A0A1B0GVS7 189 aa16.03■□□□□ 0.16
PCF11-203ENST00000530304 C17orf58Q2M2W7 97 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 133.9 ms