RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 SPATA45Q537H7 98 aa11.85□□□□□ -0.51
USP48-213ENST00000529637 HES3Q5TGS1 186 aa11.85□□□□□ -0.51
USP48-213ENST00000529637 DRAM1Q8N682 238 aa11.85□□□□□ -0.51
USP48-213ENST00000529637 Q8N7P7 452 aa11.85□□□□□ -0.51
USP48-213ENST00000529637 SPRY4Q9C004 299 aa11.85□□□□□ -0.51
USP48-213ENST00000529637 WIPI2Q9Y4P8 454 aa11.85□□□□□ -0.51
USP48-213ENST00000529637 MDFIC2A0A1B0GVS7 189 aa11.85□□□□□ -0.51
USP48-213ENST00000529637 SCO2A0A1W2PP80 73 aa11.85□□□□□ -0.51
USP48-213ENST00000529637 C20orf202A1L168 122 aa11.85□□□□□ -0.51
USP48-213ENST00000529637 F6UZH7 168 aa11.85□□□□□ -0.51
USP48-213ENST00000529637 CTRLP40313 264 aa11.85□□□□□ -0.51
USP48-213ENST00000529637 IER3P46695 156 aa11.85□□□□□ -0.51
USP48-213ENST00000529637 MAJINQ3KP22 176 aa11.85□□□□□ -0.51
USP48-213ENST00000529637 RNFT1Q5M7Z0 435 aa11.85□□□□□ -0.51
USP48-213ENST00000529637 BCL2L2Q92843 193 aaPredicted RBP11.85□□□□□ -0.51
USP48-213ENST00000529637 HEATR1Q9H583 2144 aaKnown RBP11.85□□□□□ -0.51
USP48-213ENST00000529637 DIRC3C9JPN6 131 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 TIMP3P35625 211 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 EDDM3BP56851 147 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 RANP62826 216 aaKnown RBP11.84□□□□□ -0.51
USP48-213ENST00000529637 KIAA1644Q3SXP7 199 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 ZNF766Q5HY98 468 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 TUBG2Q9NRH3 451 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 FZR1Q9UM11 496 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 POLDIP2Q9Y2S7 368 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 LOC400499M0QZD8 3231 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.84□□□□□ -0.51
USP48-213ENST00000529637 FCN1O00602 326 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 TGFBR3Q03167 851 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 ZNF826PQ6ZT77 177 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 LINC00596Q86U02 117 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 ATOH7Q8N100 152 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 OR10P1Q8NGE3 313 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 SLC25A40Q8TBP6 338 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 WNT10AQ9GZT5 417 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 K7EN84 100 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 HYPMO75409 117 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 TFF1P04155 84 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 ESDP10768 282 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 UNQ5815/PRO19632Q6UWF5 114 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 RCHY1Q96PM5 261 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 PKIBQ9C010 78 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 GNB4Q9HAV0 340 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 KCNIP1Q9NZI2 227 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 SPRR3Q9UBC9 169 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 HSPB7Q9UBY9 170 aa11.84□□□□□ -0.51
USP48-213ENST00000529637 ODAMA1E959 279 aa11.83□□□□□ -0.52
USP48-213ENST00000529637 RPL30P62888 115 aaKnown RBP11.83□□□□□ -0.52
USP48-213ENST00000529637 WDR86Q86TI4 376 aa11.83□□□□□ -0.52
USP48-213ENST00000529637 OR10G8Q8NGN5 311 aa11.83□□□□□ -0.52
USP48-213ENST00000529637 TBL2Q9Y4P3 447 aaKnown RBP11.83□□□□□ -0.52
USP48-213ENST00000529637 YLPM1P49750 1951 aaKnown RBP11.83□□□□□ -0.52
USP48-213ENST00000529637 PDE6DO43924 150 aa11.83□□□□□ -0.52
USP48-213ENST00000529637 GPX1P07203 203 aa11.83□□□□□ -0.52
USP48-213ENST00000529637 CD59P13987 128 aa11.83□□□□□ -0.52
USP48-213ENST00000529637 TRIP6Q15654 476 aaKnown RBP11.83□□□□□ -0.52
USP48-213ENST00000529637 LTC4SQ16873 150 aa11.83□□□□□ -0.52
USP48-213ENST00000529637 Q6ZN92 141 aa11.83□□□□□ -0.52
USP48-213ENST00000529637 LYG1Q8N1E2 194 aa11.83□□□□□ -0.52
USP48-213ENST00000529637 LIN7CQ9NUP9 197 aaKnown RBP11.83□□□□□ -0.52
USP48-213ENST00000529637 RRHO14718 337 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 AGFG2O95081 481 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 HINT1P49773 126 aaPredicted RBP11.82□□□□□ -0.52
USP48-213ENST00000529637 Q6P435 159 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 SIGLECL1Q8N7X8 197 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 C22orf15Q8WYQ4 148 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 TRIB1Q96RU8 372 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 TXN2Q99757 166 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 LAMTOR2Q9Y2Q5 125 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 SNURFLB1AK76 121 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 WNT9BO14905 357 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 SS18L1O75177 396 aaPredicted RBP11.82□□□□□ -0.52
USP48-213ENST00000529637 HOXC12P31275 282 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 GABRA2P47869 451 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 SLC35B1P78383 322 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 ETFRF1Q6IPR1 90 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 C1orf174Q8IYL3 243 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 C5orf30Q96GV9 206 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 SLC45A2Q9UMX9 530 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 LRP5LA4QPB2 252 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 ZNF883P0CG24 379 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 IGLC2P0DOY2 106 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 IGLC3P0DOY3 106 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 PMCHP20382 165 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 CCL11P51671 97 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 SUMO1P63165 101 aaKnown RBP11.82□□□□□ -0.52
USP48-213ENST00000529637 TPRX1Q8N7U7 411 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 ST6GALNAC3Q8NDV1 305 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 STARD4Q96DR4 205 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 PLPPR2Q96GM1 343 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 QTRT1Q9BXR0 403 aaKnown RBP11.82□□□□□ -0.52
USP48-213ENST00000529637 NRN1Q9NPD7 142 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 SPTBN2O15020 2390 aa11.82□□□□□ -0.52
USP48-213ENST00000529637 LRRC30A6NM36 301 aa11.81□□□□□ -0.52
USP48-213ENST00000529637 SMPD2O60906 423 aa11.81□□□□□ -0.52
USP48-213ENST00000529637 S1PR2O95136 353 aa11.81□□□□□ -0.52
USP48-213ENST00000529637 ARL14EPLP0DKL9 152 aa11.81□□□□□ -0.52
USP48-213ENST00000529637 RAC2P15153 192 aa11.81□□□□□ -0.52
USP48-213ENST00000529637 BRWD1-AS2P59051 145 aa11.81□□□□□ -0.52
USP48-213ENST00000529637 AESQ08117 197 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms