RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), human

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-225	ENST00000527326	PAGE4	O60829	102 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	APCS	P02743	223 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	OR5AL1	P0C617	328 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	CT45A10	P0DMU9	189 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	HMGA1	P17096	107 aa	Known RBP	4.87	□□□□□ -1.63
CD44-225	ENST00000527326	BLVRB	P30043	206 aa	Predicted RBP	4.87	□□□□□ -1.63
CD44-225	ENST00000527326	SPINT3	P49223	89 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	TMEM50B	P56557	158 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	TCTA	P57738	103 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	CTXN1	P60606	82 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	GNB1	P62873	340 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	CX3CL1	P78423	397 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	RNPS1	Q15287	305 aa	Known RBP	4.87	□□□□□ -1.63
CD44-225	ENST00000527326	ABHD17B	Q5VST6	288 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	FAM69B	Q5VUD6	431 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	PARM1	Q6UWI2	310 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326		Q6ZS49	121 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	4.87	□□□□□ -1.63
CD44-225	ENST00000527326	MMD2	Q8IY49	270 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	LRRC25	Q8N386	305 aa	Predicted RBP	4.87	□□□□□ -1.63
CD44-225	ENST00000527326	FAM19A2	Q8N3H0	131 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	TEX29	Q8N6K0	151 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	ZNF645	Q8N7E2	425 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	DCAF4L2	Q8NA75	395 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	NHLRC2	Q8NBF2	726 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	OR5D13	Q8NGL4	314 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	WIPF2	Q8TF74	440 aa	Predicted RBP	4.87	□□□□□ -1.63
CD44-225	ENST00000527326	C8orf44	Q96CB5	159 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	DAZAP1	Q96EP5	407 aa	Known RBP	4.87	□□□□□ -1.63
CD44-225	ENST00000527326	ADAT3	Q96EY9	351 aa	Predicted RBP	4.87	□□□□□ -1.63
CD44-225	ENST00000527326	C20orf173	Q96LM9	149 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	AMELY	Q99218	206 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	SLC25A33	Q9BSK2	321 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	ZMAT4	Q9H898	229 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	SH2D2A	Q9NP31	389 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	RABAC1	Q9UI14	185 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	B9D1	Q9UPM9	204 aa		4.87	□□□□□ -1.63
CD44-225	ENST00000527326	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	4.87	□□□□□ -1.63
CD44-225	ENST00000527326	SCN5A	Q14524	2016 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	MDC1	Q14676	2089 aa	Known RBP	4.86	□□□□□ -1.63
CD44-225	ENST00000527326		A0A1W2PRD5	423 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326		A0A1W2PRF3	423 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326		A0A1W2PRM7	423 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	hDV102S1	A0JD36	115 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	MBLAC1	A4D2B0	266 aa	Predicted RBP	4.86	□□□□□ -1.63
CD44-225	ENST00000527326	SHISA7	A6NL88	538 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	CHST1	O43916	411 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	FCN3	O75636	299 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	KLF7	O75840	302 aa	Predicted RBP	4.86	□□□□□ -1.63
CD44-225	ENST00000527326	UTS2	O95399	124 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	SMIM13	P0DJ93	91 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	HLA-DOB	P13765	273 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	COX5A	P20674	150 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	NPPC	P23582	126 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	PAX9	P55771	341 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	TMPRSS3	P57727	454 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	HERV-K104	P61576	105 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	DUSP2	Q05923	314 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	MYBPH	Q13203	477 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	OR8B8	Q15620	311 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	TNXA	Q16473	311 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	ALKBH6	Q3KRA9	238 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	ZNF841	Q6ZN19	808 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326		Q6ZUT4	128 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	OOSP2	Q86WS3	158 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	ZNF547	Q8IVP9	402 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	CA13	Q8N1Q1	262 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	ZADH2	Q8N4Q0	377 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	ZNF611	Q8N823	705 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	CDRT4	Q8N9R6	151 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	OR10G7	Q8NGN6	311 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	OR1L3	Q8NH93	324 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	OR1F12	Q8NHA8	337 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	NEU4	Q8WWR8	484 aa	Predicted RBP	4.86	□□□□□ -1.63
CD44-225	ENST00000527326	TAF15	Q92804	592 aa	Known RBP eCLIP	4.86	□□□□□ -1.63
CD44-225	ENST00000527326	FGF14	Q92915	247 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	CLDN23	Q96B33	292 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	CHCHD1	Q96BP2	118 aa	Known RBP	4.86	□□□□□ -1.63
CD44-225	ENST00000527326	C1orf147	Q96MC9	270 aa	Predicted RBP	4.86	□□□□□ -1.63
CD44-225	ENST00000527326	NXF5	Q9H1B4	397 aa	Known RBP	4.86	□□□□□ -1.63
CD44-225	ENST00000527326	SPANXC	Q9NY87	97 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	OR2W1	Q9Y3N9	320 aa		4.86	□□□□□ -1.63
CD44-225	ENST00000527326	LAMA3	Q16787	3333 aa		4.85	□□□□□ -1.63
CD44-225	ENST00000527326	TRGV10	A0A0A0MS01	117 aa		4.85	□□□□□ -1.63
CD44-225	ENST00000527326	CCL15-CCL14	A0A0B4J2E2	113 aa		4.85	□□□□□ -1.63
CD44-225	ENST00000527326	CXorf51A	A0A1B0GTR3	108 aa		4.85	□□□□□ -1.63
CD44-225	ENST00000527326	SMIM9	A6NGZ8	99 aa		4.85	□□□□□ -1.63
CD44-225	ENST00000527326	ZNF850	A8MQ14	1090 aa		4.85	□□□□□ -1.63
CD44-225	ENST00000527326	HRK	O00198	91 aa		4.85	□□□□□ -1.63
CD44-225	ENST00000527326	SCGB2A1	O75556	95 aa		4.85	□□□□□ -1.63
CD44-225	ENST00000527326	IGHV3-7	P01780	117 aa		4.85	□□□□□ -1.63
CD44-225	ENST00000527326	IGHG3	P01860	377 aa		4.85	□□□□□ -1.63
CD44-225	ENST00000527326	CA3	P07451	260 aa		4.85	□□□□□ -1.63
CD44-225	ENST00000527326	HIST1H1T	P22492	207 aa	Predicted RBP	4.85	□□□□□ -1.63
CD44-225	ENST00000527326	UQCRFS1	P47985	274 aa		4.85	□□□□□ -1.63
CD44-225	ENST00000527326	RPS24	P62847	133 aa	Known RBP	4.85	□□□□□ -1.63
CD44-225	ENST00000527326	ZXDA	P98168	799 aa		4.85	□□□□□ -1.63
CD44-225	ENST00000527326	PLP2	Q04941	152 aa		4.85	□□□□□ -1.63
CD44-225	ENST00000527326	DPT	Q07507	201 aa		4.85	□□□□□ -1.63
CD44-225	ENST00000527326	SRSF1	Q07955	248 aa	Known RBP eCLIP	4.85	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms