RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 VKORC1L1Q8N0U8 176 aa15.35■□□□□ 0.05
VPS28-207ENST00000526977 ZNRD1Q9P1U0 126 aa15.35■□□□□ 0.05
VPS28-207ENST00000526977 FAM90A9PA6NNJ1 464 aa15.34■□□□□ 0.05
VPS28-207ENST00000526977 RBMXL2O75526 392 aaKnown RBP15.34■□□□□ 0.05
VPS28-207ENST00000526977 NQO2P16083 231 aa15.34■□□□□ 0.05
VPS28-207ENST00000526977 ARF6P62330 175 aa15.34■□□□□ 0.05
VPS28-207ENST00000526977 AARDQ4LEZ3 155 aa15.34■□□□□ 0.05
VPS28-207ENST00000526977 OR9G1Q8NH87 305 aa15.34■□□□□ 0.05
VPS28-207ENST00000526977 ZDHHC16Q969W1 377 aa15.34■□□□□ 0.05
VPS28-207ENST00000526977 GNPNAT1Q96EK6 184 aaPredicted RBP15.34■□□□□ 0.05
VPS28-207ENST00000526977 QTRT1Q9BXR0 403 aaKnown RBP15.34■□□□□ 0.05
VPS28-207ENST00000526977 TMA7Q9Y2S6 64 aaKnown RBP15.34■□□□□ 0.05
VPS28-207ENST00000526977 STRAPQ9Y3F4 350 aaKnown RBP15.34■□□□□ 0.05
VPS28-207ENST00000526977 KPTNQ9Y664 436 aa15.34■□□□□ 0.05
VPS28-207ENST00000526977 ANKRD17O75179 2603 aaKnown RBP15.34■□□□□ 0.05
VPS28-207ENST00000526977 APCP25054 2843 aa15.34■□□□□ 0.05
VPS28-207ENST00000526977 IGHV2-70DA0A0C4DH43 119 aa15.34■□□□□ 0.05
VPS28-207ENST00000526977 PRH1P02810 166 aa15.34■□□□□ 0.05
VPS28-207ENST00000526977 CAMLGP49069 296 aa15.34■□□□□ 0.05
VPS28-207ENST00000526977 ABHD12Q8N2K0 398 aa15.34■□□□□ 0.05
VPS28-207ENST00000526977 LINC00311Q8N616 119 aa15.34■□□□□ 0.05
VPS28-207ENST00000526977 OR4S2Q8NH73 311 aa15.34■□□□□ 0.05
VPS28-207ENST00000526977 ZNF596Q8TC21 504 aa15.34■□□□□ 0.05
VPS28-207ENST00000526977 DTD1Q8TEA8 209 aa15.34■□□□□ 0.05
VPS28-207ENST00000526977 TNFRSF14Q92956 283 aa15.34■□□□□ 0.05
VPS28-207ENST00000526977 ADTRPQ96IZ2 230 aa15.34■□□□□ 0.05
VPS28-207ENST00000526977 NAV2Q8IVL1 2488 aa15.33■□□□□ 0.04
VPS28-207ENST00000526977 TRIM77I1YAP6 450 aa15.33■□□□□ 0.04
VPS28-207ENST00000526977 ARHGDIBP52566 201 aa15.33■□□□□ 0.04
VPS28-207ENST00000526977 RUNX1Q01196 453 aa15.33■□□□□ 0.04
VPS28-207ENST00000526977 Q8N7P7 452 aa15.33■□□□□ 0.04
VPS28-207ENST00000526977 SUN5Q8TC36 379 aa15.33■□□□□ 0.04
VPS28-207ENST00000526977 OR4C12Q96R67 309 aa15.33■□□□□ 0.04
VPS28-207ENST00000526977 POLQO75417 2590 aa15.33■□□□□ 0.04
VPS28-207ENST00000526977 FAM157AC9JC47 383 aa15.33■□□□□ 0.04
VPS28-207ENST00000526977 J3QR06 171 aa15.33■□□□□ 0.04
VPS28-207ENST00000526977 AGPAT2O15120 278 aa15.33■□□□□ 0.04
VPS28-207ENST00000526977 IFNA5P01569 189 aa15.33■□□□□ 0.04
VPS28-207ENST00000526977 CT45A6P0DMU7 189 aa15.33■□□□□ 0.04
VPS28-207ENST00000526977 CT45A5P0DMU8 189 aa15.33■□□□□ 0.04
VPS28-207ENST00000526977 CT45A7P0DMV0 189 aa15.33■□□□□ 0.04
VPS28-207ENST00000526977 PRTN3P24158 256 aa15.33■□□□□ 0.04
VPS28-207ENST00000526977 ERVK-16P61578 105 aa15.33■□□□□ 0.04
VPS28-207ENST00000526977 HBG1P69891 147 aa15.33■□□□□ 0.04
VPS28-207ENST00000526977 HBG2P69892 147 aa15.33■□□□□ 0.04
VPS28-207ENST00000526977 ATRAIDQ6UW56 229 aa15.33■□□□□ 0.04
VPS28-207ENST00000526977 TRAV3A0A0B4J244 114 aa15.32■□□□□ 0.04
VPS28-207ENST00000526977 CEBPZOSA8MTT3 80 aa15.32■□□□□ 0.04
VPS28-207ENST00000526977 UMAD1C9J7I0 102 aa15.32■□□□□ 0.04
VPS28-207ENST00000526977 PRRX1P54821 245 aa15.32■□□□□ 0.04
VPS28-207ENST00000526977 OR2B8PP59922 312 aa15.32■□□□□ 0.04
VPS28-207ENST00000526977 ZNF616Q08AN1 781 aa15.32■□□□□ 0.04
VPS28-207ENST00000526977 SPINK9Q5DT21 86 aa15.32■□□□□ 0.04
VPS28-207ENST00000526977 Q5PR19 223 aa15.32■□□□□ 0.04
VPS28-207ENST00000526977 THNSL2Q86YJ6 484 aa15.32■□□□□ 0.04
VPS28-207ENST00000526977 OR4A16Q8NH70 328 aa15.32■□□□□ 0.04
VPS28-207ENST00000526977 CIB3Q96Q77 187 aaPredicted RBP15.32■□□□□ 0.04
VPS28-207ENST00000526977 TMEM231Q9H6L2 316 aa15.32■□□□□ 0.04
VPS28-207ENST00000526977 UNKLQ9H9P5 680 aaKnown RBP15.32■□□□□ 0.04
VPS28-207ENST00000526977 NBPF19A0A087WUL8 3843 aa15.31■□□□□ 0.04
VPS28-207ENST00000526977 TSPAN15O95858 294 aa15.31■□□□□ 0.04
VPS28-207ENST00000526977 ADCYAP1P18509 176 aa15.31■□□□□ 0.04
VPS28-207ENST00000526977 RELBQ01201 579 aa15.31■□□□□ 0.04
VPS28-207ENST00000526977 OR13D1Q8NGV5 346 aa15.31■□□□□ 0.04
VPS28-207ENST00000526977 FAM213BQ8TBF2 198 aa15.31■□□□□ 0.04
VPS28-207ENST00000526977 RBMXL1Q96E39 390 aaKnown RBP15.31■□□□□ 0.04
VPS28-207ENST00000526977 CLEC7AQ9BXN2 247 aa15.31■□□□□ 0.04
VPS28-207ENST00000526977 TREM1Q9NP99 234 aa15.31■□□□□ 0.04
VPS28-207ENST00000526977 TMEM140Q9NV12 185 aa15.31■□□□□ 0.04
VPS28-207ENST00000526977 FAM96BQ9Y3D0 163 aa15.31■□□□□ 0.04
VPS28-207ENST00000526977 CSMD2Q7Z408 3487 aa15.31■□□□□ 0.04
VPS28-207ENST00000526977 IGHV2-26A0A0B4J1V2 119 aa15.31■□□□□ 0.04
VPS28-207ENST00000526977 PMS2P5A8MQ11 134 aa15.31■□□□□ 0.04
VPS28-207ENST00000526977 RNASEK-C17orf49H0YIS7 233 aa15.31■□□□□ 0.04
VPS28-207ENST00000526977 ZNF833PQ6ZTB9 187 aa15.31■□□□□ 0.04
VPS28-207ENST00000526977 OR10X1Q8NGY0 326 aa15.31■□□□□ 0.04
VPS28-207ENST00000526977 SCGB1C1Q8TD33 95 aa15.31■□□□□ 0.04
VPS28-207ENST00000526977 ASH1LQ9NR48 2969 aaKnown RBP15.3■□□□□ 0.04
VPS28-207ENST00000526977 IFNA17P01571 189 aa15.3■□□□□ 0.04
VPS28-207ENST00000526977 DVL1P1P54792 670 aaPredicted RBP15.3■□□□□ 0.04
VPS28-207ENST00000526977 SPCS3P61009 180 aa15.3■□□□□ 0.04
VPS28-207ENST00000526977 SLC38A11Q08AI6 406 aa15.3■□□□□ 0.04
VPS28-207ENST00000526977 BTN1A1Q13410 526 aa15.3■□□□□ 0.04
VPS28-207ENST00000526977 C10orf91Q5T1B1 145 aa15.3■□□□□ 0.04
VPS28-207ENST00000526977 OR8G2PQ6IF36 304 aa15.3■□□□□ 0.04
VPS28-207ENST00000526977 SLC25A24Q6NUK1 477 aa15.3■□□□□ 0.04
VPS28-207ENST00000526977 RHOVQ96L33 236 aa15.3■□□□□ 0.04
VPS28-207ENST00000526977 UQCC1Q9NVA1 299 aa15.3■□□□□ 0.04
VPS28-207ENST00000526977 CD5P06127 495 aa15.29■□□□□ 0.04
VPS28-207ENST00000526977 DEFA5Q01523 94 aa15.29■□□□□ 0.04
VPS28-207ENST00000526977 LOXL1Q08397 574 aaPredicted RBP15.29■□□□□ 0.04
VPS28-207ENST00000526977 LRRC75BQ2VPJ9 315 aa15.29■□□□□ 0.04
VPS28-207ENST00000526977 LILRB2Q8N423 598 aa15.29■□□□□ 0.04
VPS28-207ENST00000526977 BEND2Q8NDZ0 799 aa15.29■□□□□ 0.04
VPS28-207ENST00000526977 OR52E5Q8NH55 327 aa15.29■□□□□ 0.04
VPS28-207ENST00000526977 TMEM186Q96B77 213 aa15.29■□□□□ 0.04
VPS28-207ENST00000526977 A0A096LNT2 108 aa15.29■□□□□ 0.04
VPS28-207ENST00000526977 B4DSR2 109 aa15.29■□□□□ 0.04
VPS28-207ENST00000526977 SNCAP37840 140 aa15.29■□□□□ 0.04
VPS28-207ENST00000526977 PDLIM3Q53GG5 364 aaPredicted RBP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms