RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 HS3ST1O14792 307 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 HOXA3O43365 443 aaPredicted RBP4.22□□□□□ -1.73
CD44-218ENST00000525469 PDE6DO43924 150 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 S1PR2O95136 353 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 NDUFB8O95169 186 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 EPPINO95925 133 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 TBX6O95947 436 aaPredicted RBP4.22□□□□□ -1.73
CD44-218ENST00000525469 HBZP02008 142 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 HPNP05981 417 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 CRISP2P16562 243 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 NPPBP16860 134 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 PSMB5P28074 263 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 APOBEC1P41238 236 aaKnown RBP4.22□□□□□ -1.73
CD44-218ENST00000525469 MAGEA5P43359 124 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 GPR6P46095 362 aaPredicted RBP4.22□□□□□ -1.73
CD44-218ENST00000525469 SSR4P51571 173 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 TCL1AP56279 114 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 CKS1BP61024 79 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 FMODQ06828 376 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 CD69Q07108 199 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 TMEM267Q0VDI3 215 aaPredicted RBP4.22□□□□□ -1.73
CD44-218ENST00000525469 MGAT2Q10469 447 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 EIF2B1Q14232 305 aaKnown RBP4.22□□□□□ -1.73
CD44-218ENST00000525469 DUSP5Q16690 384 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 C18orf21Q32NC0 220 aaPredicted RBP4.22□□□□□ -1.73
CD44-218ENST00000525469 ZNF260Q3ZCT1 412 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 STUMQ69YW2 141 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 TMEM182Q6ZP80 229 aaPredicted RBP4.22□□□□□ -1.73
CD44-218ENST00000525469 LHFPL1Q86WI0 220 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 MEX3DQ86XN8 651 aaKnown RBP4.22□□□□□ -1.73
CD44-218ENST00000525469 LGI3Q8N145 548 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 CLDN19Q8N6F1 224 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 STPG4Q8N801 248 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 ZNF441Q8N8Z8 693 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 FER1L6-AS1Q8NA97 138 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 OR4D11Q8NGI4 311 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 OR51T1Q8NGJ9 327 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 OR10S1Q8NGN2 331 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 OR5AK3PQ8NH89 298 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 SLC25A40Q8TBP6 338 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 VN1R17PQ8TDU5 208 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 ASB10Q8WXI3 467 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 GPX7Q96SL4 187 aaPredicted RBP4.22□□□□□ -1.73
CD44-218ENST00000525469 GFI1Q99684 422 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 NKX3-1Q99801 234 aaPredicted RBP4.22□□□□□ -1.73
CD44-218ENST00000525469 SMIM7Q9BQ49 75 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 PDCD1LG2Q9BQ51 273 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 FAM110AQ9BQ89 295 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 KLHDC3Q9BQ90 382 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 FAM173AQ9BQD7 235 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 TTTY12Q9BZ98 90 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 LPAR5Q9H1C0 372 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 PELI2Q9HAT8 420 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 DECR2Q9NUI1 292 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 PLEKHJ1Q9NW61 149 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 ZNF319Q9P2F9 582 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 SLC7A7Q9UM01 511 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 LIPGQ9Y5X9 500 aa4.22□□□□□ -1.73
CD44-218ENST00000525469 TRAV9-2A0A087WT02 112 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 TRAV38-1A0A0B4J264 116 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 A0A1W2PPK0 400 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 TMEM189A5PLL7 270 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 DPRXA6NFQ7 191 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 SLC22A20A6NK97 555 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 ZNF716A6NP11 495 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 B5MCH6 92 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 H0YIG0 161 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 HYPMO75409 117 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 HAND1O96004 215 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 RENP00797 406 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 MAS1P04201 325 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 ISG15P05161 165 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 MRPL3P09001 348 aaKnown RBP4.21□□□□□ -1.74
CD44-218ENST00000525469 CCL2P13500 99 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 SSTR5P35346 364 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 HRH1P35367 487 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 LGALS7P47929 136 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 DNASE1L1P49184 302 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 ZNF136P52737 540 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 CLDN15P56746 228 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 FXYD6P3P58550 94 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 RPS4XP62701 263 aaKnown RBP4.21□□□□□ -1.74
CD44-218ENST00000525469 RUNX1Q01196 453 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 MEF2BQ02080 365 aaPredicted RBP4.21□□□□□ -1.74
CD44-218ENST00000525469 FOXF1Q12946 379 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 HSPB3Q12988 150 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 FAM53BQ14153 422 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 POU2AF1Q16633 256 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 CD300EQ496F6 205 aaPredicted RBP4.21□□□□□ -1.74
CD44-218ENST00000525469 C19orf54Q5BKX5 351 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 ZNF684Q5T5D7 378 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 PRAMEF5Q5TYX0 476 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 PRAMEF6Q5VXH4 476 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 FAM90A2PQ658T7 463 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 SPSB3Q6PJ21 355 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 RASL11AQ6T310 242 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 ZNF550Q7Z398 422 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 LRP11Q86VZ4 500 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 BAGE3Q86Y29 109 aa4.21□□□□□ -1.74
CD44-218ENST00000525469 BAGE2Q86Y30 109 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms