RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 ANAPC10Q9UM13 185 aa12.6□□□□□ -0.39
LSM1-205ENST00000523511 IGHV4OR15-8A0A075B7B6 117 aa12.59□□□□□ -0.39
LSM1-205ENST00000523511 A0A087WW49 117 aa12.59□□□□□ -0.39
LSM1-205ENST00000523511 FAM223BA6NKX1 122 aa12.59□□□□□ -0.39
LSM1-205ENST00000523511 K7EIL1 84 aa12.59□□□□□ -0.39
LSM1-205ENST00000523511 NOL3O60936 208 aaKnown RBP12.59□□□□□ -0.39
LSM1-205ENST00000523511 SAP30O75446 220 aa12.59□□□□□ -0.39
LSM1-205ENST00000523511 IFNA6P05013 189 aa12.59□□□□□ -0.39
LSM1-205ENST00000523511 SMIM18P0DKX4 95 aa12.59□□□□□ -0.39
LSM1-205ENST00000523511 ELK1P19419 428 aa12.59□□□□□ -0.39
LSM1-205ENST00000523511 HLA-DMAP28067 261 aa12.59□□□□□ -0.39
LSM1-205ENST00000523511 RPL27AP46776 148 aaKnown RBP12.59□□□□□ -0.39
LSM1-205ENST00000523511 ERVK-16P61578 105 aa12.59□□□□□ -0.39
LSM1-205ENST00000523511 RPL8P62917 257 aaKnown RBP12.59□□□□□ -0.39
LSM1-205ENST00000523511 CTF1Q16619 201 aa12.59□□□□□ -0.39
LSM1-205ENST00000523511 ZNF818PQ6ZRF7 136 aa12.59□□□□□ -0.39
LSM1-205ENST00000523511 FAM223AQ8IWN6 122 aa12.59□□□□□ -0.39
LSM1-205ENST00000523511 VKORC1L1Q8N0U8 176 aa12.59□□□□□ -0.39
LSM1-205ENST00000523511 PUSL1Q8N0Z8 303 aaKnown RBP12.59□□□□□ -0.39
LSM1-205ENST00000523511 TTC9CQ8N5M4 171 aa12.59□□□□□ -0.39
LSM1-205ENST00000523511 DLX4Q92988 240 aaPredicted RBP12.59□□□□□ -0.39
LSM1-205ENST00000523511 MOB3AQ96BX8 217 aa12.59□□□□□ -0.39
LSM1-205ENST00000523511 PLEKHA2Q9HB19 425 aa12.59□□□□□ -0.39
LSM1-205ENST00000523511 PEF1Q9UBV8 284 aaKnown RBP12.59□□□□□ -0.39
LSM1-205ENST00000523511 WI2-2373I1.2A0A1W2PRP0 233 aa12.58□□□□□ -0.4
LSM1-205ENST00000523511 CYB5BO43169 146 aa12.58□□□□□ -0.4
LSM1-205ENST00000523511 GNRHRP30968 328 aa12.58□□□□□ -0.4
LSM1-205ENST00000523511 HRH1P35367 487 aa12.58□□□□□ -0.4
LSM1-205ENST00000523511 SLURP1P55000 103 aa12.58□□□□□ -0.4
LSM1-205ENST00000523511 SSBP2P81877 361 aaPredicted RBP12.58□□□□□ -0.4
LSM1-205ENST00000523511 ATP5G2Q06055 141 aa12.58□□□□□ -0.4
LSM1-205ENST00000523511 SSX9Q7RTT3 188 aa12.58□□□□□ -0.4
LSM1-205ENST00000523511 LYSMD2Q8IV50 215 aa12.58□□□□□ -0.4
LSM1-205ENST00000523511 NECAP1Q8NC96 275 aa12.58□□□□□ -0.4
LSM1-205ENST00000523511 ADAD2Q8NCV1 583 aaKnown RBP12.58□□□□□ -0.4
LSM1-205ENST00000523511 DMBX1Q8NFW5 382 aa12.58□□□□□ -0.4
LSM1-205ENST00000523511 OR6Q1Q8NGQ2 317 aa12.58□□□□□ -0.4
LSM1-205ENST00000523511 BET1LQ9NYM9 111 aa12.58□□□□□ -0.4
LSM1-205ENST00000523511 SCOCQ9UIL1 159 aa12.58□□□□□ -0.4
LSM1-205ENST00000523511 ZNF256Q9Y2P7 627 aaPredicted RBP12.58□□□□□ -0.4
LSM1-205ENST00000523511 ANKRD34BA5PLL1 514 aa12.57□□□□□ -0.4
LSM1-205ENST00000523511 GPR31O00270 319 aa12.57□□□□□ -0.4
LSM1-205ENST00000523511 RGS5O15539 181 aa12.57□□□□□ -0.4
LSM1-205ENST00000523511 LY86O95711 162 aa12.57□□□□□ -0.4
LSM1-205ENST00000523511 APELAP0DMC3 54 aa12.57□□□□□ -0.4
LSM1-205ENST00000523511 HLA-GP17693 338 aa12.57□□□□□ -0.4
LSM1-205ENST00000523511 ALDH3B2P48448 385 aa12.57□□□□□ -0.4
LSM1-205ENST00000523511 MRGPRG-AS1Q2M3A8 158 aa12.57□□□□□ -0.4
LSM1-205ENST00000523511 ASPHD1Q5U4P2 390 aa12.57□□□□□ -0.4
LSM1-205ENST00000523511 OR51H1Q8NH63 302 aa12.57□□□□□ -0.4
LSM1-205ENST00000523511 RAB2BQ8WUD1 216 aa12.57□□□□□ -0.4
LSM1-205ENST00000523511 FYTTD1Q96QD9 318 aaKnown RBP12.57□□□□□ -0.4
LSM1-205ENST00000523511 BCL7BQ9BQE9 202 aa12.57□□□□□ -0.4
LSM1-205ENST00000523511 COMMD5Q9GZQ3 224 aa12.57□□□□□ -0.4
LSM1-205ENST00000523511 SLC2A9Q9NRM0 540 aa12.57□□□□□ -0.4
LSM1-205ENST00000523511 COMMD9Q9P000 198 aa12.57□□□□□ -0.4
LSM1-205ENST00000523511 EXTL2Q9UBQ6 330 aa12.57□□□□□ -0.4
LSM1-205ENST00000523511 ZNF257Q9Y2Q1 563 aa12.57□□□□□ -0.4
LSM1-205ENST00000523511 PGLYRP1O75594 196 aaPredicted RBP12.56□□□□□ -0.4
LSM1-205ENST00000523511 FGF2P09038 288 aa12.56□□□□□ -0.4
LSM1-205ENST00000523511 DEFA4P12838 97 aa12.56□□□□□ -0.4
LSM1-205ENST00000523511 HIST1H1BP16401 226 aaKnown RBP12.56□□□□□ -0.4
LSM1-205ENST00000523511 F2RP25116 425 aa12.56□□□□□ -0.4
LSM1-205ENST00000523511 CD69Q07108 199 aa12.56□□□□□ -0.4
LSM1-205ENST00000523511 OR4A47Q6IF82 309 aa12.56□□□□□ -0.4
LSM1-205ENST00000523511 ZNF343Q6P1L6 599 aa12.56□□□□□ -0.4
LSM1-205ENST00000523511 ACSM6Q6P461 480 aa12.56□□□□□ -0.4
LSM1-205ENST00000523511 FCAMRQ8WWV6 532 aa12.56□□□□□ -0.4
LSM1-205ENST00000523511 DGCR14Q96DF8 476 aaKnown RBP12.56□□□□□ -0.4
LSM1-205ENST00000523511 GPHA2Q96T91 129 aa12.56□□□□□ -0.4
LSM1-205ENST00000523511 NAA50Q9GZZ1 169 aaKnown RBP12.56□□□□□ -0.4
LSM1-205ENST00000523511 RABL2AQ9UBK7 228 aaPredicted RBP12.56□□□□□ -0.4
LSM1-205ENST00000523511 RABL2BQ9UNT1 228 aa12.56□□□□□ -0.4
LSM1-205ENST00000523511 NPIPB5A8MRT5 1133 aa12.55□□□□□ -0.4
LSM1-205ENST00000523511 SNAPC5O75971 98 aa12.55□□□□□ -0.4
LSM1-205ENST00000523511 TBPP20226 339 aa12.55□□□□□ -0.4
LSM1-205ENST00000523511 RPL5P46777 297 aaKnown RBP12.55□□□□□ -0.4
LSM1-205ENST00000523511 TMBIM6P55061 237 aa12.55□□□□□ -0.4
LSM1-205ENST00000523511 BRWD1-AS2P59051 145 aa12.55□□□□□ -0.4
LSM1-205ENST00000523511 MRPS10P82664 201 aaKnown RBP12.55□□□□□ -0.4
LSM1-205ENST00000523511 RHOGP84095 191 aa12.55□□□□□ -0.4
LSM1-205ENST00000523511 POU2AF1Q16633 256 aa12.55□□□□□ -0.4
LSM1-205ENST00000523511 RPEL1Q2QD12 228 aa12.55□□□□□ -0.4
LSM1-205ENST00000523511 HSD17B13Q7Z5P4 300 aaPredicted RBP12.55□□□□□ -0.4
LSM1-205ENST00000523511 CLVS1Q8IUQ0 354 aaPredicted RBP12.55□□□□□ -0.4
LSM1-205ENST00000523511 SLC38A6Q8IZM9 456 aa12.55□□□□□ -0.4
LSM1-205ENST00000523511 SRSF8Q9BRL6 282 aaKnown RBP12.55□□□□□ -0.4
LSM1-205ENST00000523511 THYN1Q9P016 225 aa12.55□□□□□ -0.4
LSM1-205ENST00000523511 TRBV9A0A0B4J1U6 114 aa12.54□□□□□ -0.4
LSM1-205ENST00000523511 UPK2O00526 184 aa12.54□□□□□ -0.4
LSM1-205ENST00000523511 RLN1P04808 185 aa12.54□□□□□ -0.4
LSM1-205ENST00000523511 ZNF735P0CB33 412 aa12.54□□□□□ -0.4
LSM1-205ENST00000523511 UCP3P55916 312 aa12.54□□□□□ -0.4
LSM1-205ENST00000523511 RNASE10Q5GAN6 216 aaKnown RBP12.54□□□□□ -0.4
LSM1-205ENST00000523511 VAX1Q5SQQ9 334 aa12.54□□□□□ -0.4
LSM1-205ENST00000523511 THOC7Q6I9Y2 204 aaKnown RBP12.54□□□□□ -0.4
LSM1-205ENST00000523511 CADM3Q8N126 398 aa12.54□□□□□ -0.4
LSM1-205ENST00000523511 TSC22D3Q99576 134 aa12.54□□□□□ -0.4
LSM1-205ENST00000523511 AKIP1Q9NQ31 210 aa12.54□□□□□ -0.4
LSM1-205ENST00000523511 FAM212BQ9NTI7 297 aaPredicted RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms