RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 ZBTB34Q8NCN2 500 aa13.33□□□□□ -0.28
DDX41-217ENST00000515562 AIFM2Q9BRQ8 373 aa13.33□□□□□ -0.28
DDX41-217ENST00000515562 HUWE1Q7Z6Z7 4374 aaKnown RBP13.32□□□□□ -0.28
DDX41-217ENST00000515562 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.32□□□□□ -0.28
DDX41-217ENST00000515562 DPPA5A6NC42 116 aa13.32□□□□□ -0.28
DDX41-217ENST00000515562 NPIPB5A8MRT5 1133 aa13.32□□□□□ -0.28
DDX41-217ENST00000515562 TEX22C9J3V5 150 aa13.32□□□□□ -0.28
DDX41-217ENST00000515562 BMPR1BO00238 502 aa13.32□□□□□ -0.28
DDX41-217ENST00000515562 CSN3P07498 182 aa13.32□□□□□ -0.28
DDX41-217ENST00000515562 C15orf32Q32M92 178 aa13.32□□□□□ -0.28
DDX41-217ENST00000515562 GTSCR1Q86UQ5 136 aa13.32□□□□□ -0.28
DDX41-217ENST00000515562 AUNIPQ9H7T9 357 aa13.32□□□□□ -0.28
DDX41-217ENST00000515562 ADAM30Q9UKF2 790 aa13.32□□□□□ -0.28
DDX41-217ENST00000515562 RBFOX2O43251 390 aaKnown RBP eCLIP13.31□□□□□ -0.286e-7■■■■□ 21.9
DDX41-217ENST00000515562 DHFRP00374 187 aa13.31□□□□□ -0.28
DDX41-217ENST00000515562 ZNF735P0CB33 412 aa13.31□□□□□ -0.28
DDX41-217ENST00000515562 BRWD1-AS2P59051 145 aa13.31□□□□□ -0.28
DDX41-217ENST00000515562 CATR1Q13166 79 aa13.31□□□□□ -0.28
DDX41-217ENST00000515562 OR2K2Q8NGT1 345 aa13.31□□□□□ -0.28
DDX41-217ENST00000515562 OR4A5Q8NH83 315 aa13.31□□□□□ -0.28
DDX41-217ENST00000515562 VCX3AQ9NNX9 186 aa13.31□□□□□ -0.28
DDX41-217ENST00000515562 CCL28Q9NRJ3 127 aa13.31□□□□□ -0.28
DDX41-217ENST00000515562 SLC2A9Q9NRM0 540 aa13.31□□□□□ -0.28
DDX41-217ENST00000515562 C19orf73Q9NVV2 129 aa13.31□□□□□ -0.28
DDX41-217ENST00000515562 HMX3A6NHT5 357 aa13.3□□□□□ -0.28
DDX41-217ENST00000515562 TNFSF12O43508 249 aa13.3□□□□□ -0.28
DDX41-217ENST00000515562 OR2J3O76001 311 aa13.3□□□□□ -0.28
DDX41-217ENST00000515562 RPL8P62917 257 aaKnown RBP13.3□□□□□ -0.28
DDX41-217ENST00000515562 SPAG16Q8N0X2 631 aa13.3□□□□□ -0.28
DDX41-217ENST00000515562 OR5AP2Q8NGF4 316 aa13.3□□□□□ -0.28
DDX41-217ENST00000515562 MUC7Q8TAX7 377 aa13.3□□□□□ -0.28
DDX41-217ENST00000515562 BORCS5Q969J3 196 aa13.3□□□□□ -0.28
DDX41-217ENST00000515562 KCTD12Q96CX2 325 aaKnown RBP13.3□□□□□ -0.28
DDX41-217ENST00000515562 FYTTD1Q96QD9 318 aaKnown RBP13.3□□□□□ -0.28
DDX41-217ENST00000515562 GPHA2Q96T91 129 aa13.3□□□□□ -0.28
DDX41-217ENST00000515562 TM2D3Q9BRN9 247 aa13.3□□□□□ -0.28
DDX41-217ENST00000515562 SLC5A7Q9GZV3 580 aa13.3□□□□□ -0.28
DDX41-217ENST00000515562 IFT46Q9NQC8 304 aa13.3□□□□□ -0.28
DDX41-217ENST00000515562 BET1LQ9NYM9 111 aa13.3□□□□□ -0.28
DDX41-217ENST00000515562 XRCC3O43542 346 aa13.29□□□□□ -0.28
DDX41-217ENST00000515562 IL6RP08887 468 aaPredicted RBP13.29□□□□□ -0.28
DDX41-217ENST00000515562 PTHLHP12272 177 aa13.29□□□□□ -0.28
DDX41-217ENST00000515562 HLA-GP17693 338 aa13.29□□□□□ -0.28
DDX41-217ENST00000515562 TAS2R31P59538 309 aa13.29□□□□□ -0.28
DDX41-217ENST00000515562 FXYD4P59646 89 aa13.29□□□□□ -0.28
DDX41-217ENST00000515562 UBE2NLQ5JXB2 153 aa13.29□□□□□ -0.28
DDX41-217ENST00000515562 OR4A47Q6IF82 309 aa13.29□□□□□ -0.28
DDX41-217ENST00000515562 SSX9Q7RTT3 188 aa13.29□□□□□ -0.28
DDX41-217ENST00000515562 GIMAP1Q8WWP7 306 aa13.29□□□□□ -0.28
DDX41-217ENST00000515562 S100A16Q96FQ6 103 aaKnown RBP13.29□□□□□ -0.28
DDX41-217ENST00000515562 THAP7Q9BT49 309 aaPredicted RBP13.29□□□□□ -0.28
DDX41-217ENST00000515562 CRYGCP07315 174 aa13.28□□□□□ -0.28
DDX41-217ENST00000515562 PSMB6P28072 239 aa13.28□□□□□ -0.28
DDX41-217ENST00000515562 HERV-K104P61576 105 aa13.28□□□□□ -0.28
DDX41-217ENST00000515562 LAX1Q8IWV1 398 aa13.28□□□□□ -0.28
DDX41-217ENST00000515562 HRASLSQ9HDD0 168 aa13.28□□□□□ -0.28
DDX41-217ENST00000515562 FBXL7Q9UJT9 491 aa13.28□□□□□ -0.28
DDX41-217ENST00000515562 RYR3Q15413 4870 aa13.27□□□□□ -0.29
DDX41-217ENST00000515562 A0A1B0GW64 132 aa13.27□□□□□ -0.29
DDX41-217ENST00000515562 E7EUB6 86 aa13.27□□□□□ -0.29
DDX41-217ENST00000515562 SULT1C2O00338 296 aa13.27□□□□□ -0.29
DDX41-217ENST00000515562 GGCTO75223 188 aaKnown RBP13.27□□□□□ -0.29
DDX41-217ENST00000515562 HPRT1P00492 218 aa13.27□□□□□ -0.29
DDX41-217ENST00000515562 FCER2P06734 321 aa13.27□□□□□ -0.29
DDX41-217ENST00000515562 FGF2P09038 288 aa13.27□□□□□ -0.29
DDX41-217ENST00000515562 AREGP15514 252 aa13.27□□□□□ -0.29
DDX41-217ENST00000515562 NQO2P16083 231 aa13.27□□□□□ -0.29
DDX41-217ENST00000515562 HIST1H1BP16401 226 aaKnown RBP13.27□□□□□ -0.29
DDX41-217ENST00000515562 POU2AF1Q16633 256 aa13.27□□□□□ -0.29
DDX41-217ENST00000515562 TMEM69Q5SWH9 247 aa13.27□□□□□ -0.29
DDX41-217ENST00000515562 TMEM17Q86X19 198 aa13.27□□□□□ -0.29
DDX41-217ENST00000515562 CD300LFQ8TDQ1 290 aa13.27□□□□□ -0.29
DDX41-217ENST00000515562 A0A087WXM4 84 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 MEIS3P1A6NDR6 274 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 PPP5D1E7EU14 171 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 TNFAIP8O95379 198 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 DEFA4P12838 97 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 CTRB1P17538 263 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 TGFBR1P36897 503 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 MECP2P51608 486 aaKnown RBP13.26□□□□□ -0.29
DDX41-217ENST00000515562 KLK9Q2XQG4 91 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 AADACL3Q5VUY0 350 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 CTRB2Q6GPI1 263 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 ZNF818PQ6ZRF7 136 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 C19orf35Q6ZS72 473 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 SAMD12Q8N8I0 201 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 OR51H1Q8NH63 302 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 DYNLRB2Q8TF09 96 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 EEF1AKMT3Q96AZ1 226 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 FANCD2OSQ96PS1 177 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 CITED4Q96RK1 184 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 TUBA4BQ9H853 241 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 PLEKHA2Q9HB19 425 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 EHFQ9NZC4 300 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 COMMD9Q9P000 198 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 KLK9Q9UKQ9 250 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 ANAPC10Q9UM13 185 aa13.26□□□□□ -0.29
DDX41-217ENST00000515562 IZUMO1RA6ND01 250 aa13.25□□□□□ -0.29
DDX41-217ENST00000515562 LGALS9O00182 355 aa13.25□□□□□ -0.29
DDX41-217ENST00000515562 ARL3P36405 182 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms