RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 CD81P60033 236 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 EFNB3Q15768 340 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 ZNF709Q8N972 641 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 SPOCK3Q9BQ16 436 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 JPT1Q9UK76 154 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 SPTAN1Q13813 2472 aaKnown RBP13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 ABCA4P78363 2273 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 A1L4Q6 167 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 B9A039 149 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 HIST1H2BKO60814 126 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 HIST1H2BJP06899 126 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 GZMHP20718 246 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 HIST1H2BOP23527 126 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 HIST1H2BBP33778 126 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 CFHR2P36980 270 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 HIST1H2BDP58876 126 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 HIST1H2BCP62807 126 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 HIST2H2BEQ16778 126 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 CR1LQ2VPA4 569 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 Q3ZCU0 254 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 FFAR4Q5NUL3 377 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 MUC15Q8N387 334 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 OR10G9Q8NGN4 311 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 OR10G7Q8NGN6 311 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 PPP1R35Q8TAP8 253 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 LRRC29Q8WV35 223 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 HIST1H2BHQ93079 126 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 DIRC2Q96SL1 478 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 HIST1H2BNQ99877 126 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 HIST1H2BMQ99879 126 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 SMIM7Q9BQ49 75 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 NPCDR1Q9BY65 106 aa13.25□□□□□ -0.29
SQSTM1-213ENST00000510187 MARCH11A6NNE9 402 aa13.24□□□□□ -0.29
SQSTM1-213ENST00000510187 LINC00473A8K010 186 aa13.24□□□□□ -0.29
SQSTM1-213ENST00000510187 RBFOX2O43251 390 aaKnown RBP eCLIP13.24□□□□□ -0.294e-14■■■□□ 14.6
SQSTM1-213ENST00000510187 IGHV1-46P01743 117 aa13.24□□□□□ -0.29
SQSTM1-213ENST00000510187 S100A2P29034 98 aa13.24□□□□□ -0.29
SQSTM1-213ENST00000510187 PRDX2P32119 198 aa13.24□□□□□ -0.29
SQSTM1-213ENST00000510187 NDUFA6P56556 154 aa13.24□□□□□ -0.29
SQSTM1-213ENST00000510187 TMEM241Q24JQ0 296 aa13.24□□□□□ -0.29
SQSTM1-213ENST00000510187 TMEM249Q2WGJ8 235 aa13.24□□□□□ -0.29
SQSTM1-213ENST00000510187 NCR3LG1Q68D85 454 aa13.24□□□□□ -0.29
SQSTM1-213ENST00000510187 BTNL3Q6UXE8 466 aa13.24□□□□□ -0.29
SQSTM1-213ENST00000510187 CD177Q8N6Q3 437 aa13.24□□□□□ -0.29
SQSTM1-213ENST00000510187 UFSP2Q9NUQ7 469 aa13.24□□□□□ -0.29
SQSTM1-213ENST00000510187 METRNQ9UJH8 293 aa13.24□□□□□ -0.29
SQSTM1-213ENST00000510187 PSG11Q9UQ72 335 aa13.24□□□□□ -0.29
SQSTM1-213ENST00000510187 SRRM5B3KS81 715 aa13.23□□□□□ -0.29
SQSTM1-213ENST00000510187 CD55P08174 381 aa13.23□□□□□ -0.29
SQSTM1-213ENST00000510187 RPP30P78346 268 aaKnown RBP13.23□□□□□ -0.29
SQSTM1-213ENST00000510187 R3HDM4Q96D70 268 aa13.23□□□□□ -0.29
SQSTM1-213ENST00000510187 OR2V2Q96R30 315 aa13.23□□□□□ -0.29
SQSTM1-213ENST00000510187 SLC25A22Q9H936 323 aa13.23□□□□□ -0.29
SQSTM1-213ENST00000510187 DYNLRB1Q9NP97 96 aa13.23□□□□□ -0.29
SQSTM1-213ENST00000510187 GAR1Q9NY12 217 aaKnown RBP13.23□□□□□ -0.29
SQSTM1-213ENST00000510187 A0A1W2PPR1 153 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 SMCO3A2RU48 225 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 C17orf100A8MU93 164 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 MGST3O14880 152 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 ST8SIA5O15466 376 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 YPEL1O60688 119 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 YIF1AO95070 293 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 HPRT1P00492 218 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 TRGC2P03986 189 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 TNFSF4P23510 183 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 DUTP33316 252 aaKnown RBP13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 KIR2DS2P43631 304 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 GPR12P47775 334 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 TNFAIP6P98066 277 aaPredicted RBP13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 ACOT6Q3I5F7 207 aaPredicted RBP13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 PDLIM3Q53GG5 364 aaPredicted RBP13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 FAM53AQ6NSI3 398 aaPredicted RBP13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 ZCCHC24Q8N2G6 241 aaKnown RBP13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 OR52E5Q8NH55 327 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 ZDHHC16Q969W1 377 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 SNX22Q96L94 193 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 YPEL2Q96QA6 119 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 GGACTQ9BVM4 153 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 NCOR1P1Q9H4R4 102 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 MIOXQ9UGB7 285 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 PKDREJQ9NTG1 2253 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 LRRK2Q5S007 2527 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 IFITM10A6NMD0 228 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 C15orf62A8K5M9 175 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 PPP1R2P9O14990 202 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 MPDU1O75352 247 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 RBMXL2O75526 392 aaKnown RBP13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 GOSR1O95249 250 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 DNLZQ5SXM8 178 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 MEGF10Q96KG7 1140 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 PYGO2Q9BRQ0 406 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 MS4A5Q9H3V2 200 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 IL19Q9UHD0 177 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 WDR83OSQ9Y284 106 aa13.22□□□□□ -0.29
SQSTM1-213ENST00000510187 IGHV3-43A0A0B4J1X8 118 aa13.21□□□□□ -0.3
SQSTM1-213ENST00000510187 LINC00587B1AMM8 73 aa13.21□□□□□ -0.3
SQSTM1-213ENST00000510187 F2RL2O00254 374 aa13.21□□□□□ -0.3
SQSTM1-213ENST00000510187 ITGB1BP1O14713 200 aa13.21□□□□□ -0.3
SQSTM1-213ENST00000510187 IGHV3-43DP0DP04 118 aa13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms